PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F02029.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27201.8 Da PI: 6.8605 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.6 | 3.3e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +rien++nrqvtfskRr+g++KKA+EL +LCdaev +i+fsstg+ly++ Pahal.F02029.1 9 ERIENTTNRQVTFSKRRTGLFKKAKELAILCDAEVGLIVFSSTGRLYDFT 58 69**********************************************96 PP | |||||||
2 | K-box | 75.1 | 1.9e-25 | 80 | 169 | 9 | 98 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++a+a+ +q+e+ L+++++nLq+ + +l+G++L+ L++k+Lq+Le+ Le sl++iR kK++l+++qi+el k l++en +L +k+ Pahal.F02029.1 80 SATAEAKLWQREAGILRQQLHNLQEHHLQLMGQQLSCLDVKDLQNLENTLEMSLRNIRLKKDQLMTDQIQELNTKGSLLHKENIELYNKF 169 56788999******************************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.10E-43 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-32 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.4E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.9E-24 | 83 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.195 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGKIVIER IENTTNRQVT FSKRRTGLFK KAKELAILCD AEVGLIVFSS TGRLYDFTNT 60 SMKSVIERYH EAKDHHVIMS ATAEAKLWQR EAGILRQQLH NLQEHHLQLM GQQLSCLDVK 120 DLQNLENTLE MSLRNIRLKK DQLMTDQIQE LNTKGSLLHK ENIELYNKFN CIHQENTEIK 180 KKVYGQGVNE HPTDTAVKHR IVNLEDEDVA VNLELSQPQN VESEKSGTPS LGEDDKN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_B | 8e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_C | 8e-21 | 1 | 76 | 1 | 76 | MEF2C |
5f28_D | 8e-21 | 1 | 76 | 1 | 76 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820845.1 | 1e-176 | MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 2e-94 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A2S3I2P1 | 1e-175 | A0A2S3I2P1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb01587.1.p | 1e-124 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 5e-77 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F02029.1 |
Publications ? help Back to Top | |||
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