PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F01978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 121aa MW: 12560.3 Da PI: 8.2607 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94.6 | 8.1e-30 | 29 | 82 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +vrY eC++NhAas+GghavDGC+Ef+++ ge+gtaaal+CaACgCHR+FHRr Pahal.F01978.1 29 GVRYGECRRNHAASMGGHAVDGCREFLAE-GEDGTAAALRCAACGCHRSFHRRVA 82 68**************************8.999********************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 26 | No hit | No description |
Pfam | PF04770 | 4.8E-29 | 30 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.6E-24 | 31 | 80 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.469 | 32 | 81 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-13 | 38 | 78 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MMKRMVILRR CHPPPPPPAA VLMGGCGGGV RYGECRRNHA ASMGGHAVDG CREFLAEGED 60 GTAAALRCAA CGCHRSFHRR VARRCCCFFC CDDDAAAAGA RWGGGDGCSP ESSASSTTPR 120 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727008 | 2e-73 | KJ727008.1 Zea mays clone pUT3984 ZF-HD transcription factor (ZHD19) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025821999.1 | 3e-80 | mini zinc finger protein 4-like | ||||
Swissprot | Q0J5F8 | 9e-35 | MIF4_ORYSJ; Mini zinc finger protein 4 | ||||
TrEMBL | A0A2S3I2R9 | 8e-79 | A0A2S3I2R9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D7Q2 | 8e-79 | A0A2T7D7Q2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fa00896.1.p | 2e-41 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1431 | 34 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74660.1 | 6e-19 | mini zinc finger 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F01978.1 |
Publications ? help Back to Top | |||
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