PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01971.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 352aa    MW: 36149.5 Da    PI: 8.6171
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01971.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.47.2e-334397558
     ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    +Y+eClkNhAaslGgha+DGCgEfmp++g++ +++ +l+CaACgCHRnFHRr+++
  Pahal.F01971.1 43 VYRECLKNHAASLGGHALDGCGEFMPAPGADpADPGSLRCAACGCHRNFHRRQPA 97
                    7***************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.2E-274395IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-174397IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2074495IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-304495IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466898.36E-16188257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28192258IPR009057Homeodomain-like
TIGRFAMsTIGR015655.0E-22199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MQAVVDIKYM PRLFLNGAGA GAAGKKMRPA AAAAAWGAGE AGVYRECLKN HAASLGGHAL  60
DGCGEFMPAP GADPADPGSL RCAACGCHRN FHRRQPAPAP HVVRDGRAPR GEEAPEDRLP  120
TAFDEETESS DEGSDFDEDR PLSPLPAPAV GPPGYLQPPP HMHLALGTGA QGASTPAAAP  180
RPPAPPGPVP SPGAAAAARK RFRTKFSPEQ KQRMQALSER LGWRLQKRDE AVVDESCREI  240
GVTKGVFKVW MHNNKHNFVA GHSARRSASA SAAGSPSPHA AAAHPSAPHA AAVRPSGPHA  300
APPVAPAPPP PPPAPVHADF NINGTAAATD YFRVVQPGPS TASGADSPLS A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-201992571775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9640701e-100EU964070.1 Zea mays clone 275696 ZF-HD homeobox protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822641.11e-161zinc-finger homeodomain protein 9-like isoform X2
SwissprotQ6Z5282e-77ZHD10_ORYSJ; Zinc-finger homeodomain protein 10
TrEMBLA0A2T8IH381e-165A0A2T8IH38_9POAL; Uncharacterized protein
STRINGGRMZM2G438438_P011e-129(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.17e-45zinc finger homeodomain 1