PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01731.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 413aa    MW: 44567.1 Da    PI: 6.2362
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01731.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-1446104255
             AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GV++++++gr++A+++d  + +g    k+ k+++lg ++ ++ Aa+a++ a++k++g
  Pahal.F01731.1  46 AYRGVTRHRWTGRFEAHLWDK-DaRGgsrgKKgKQVYLGAYDDEDAAARAHDLAALKYWG 104
                     69******************4.55555887557**********99*************98 PP
2AP247.44.9e-15147198155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I  +     +k+ +lg++ t eeAa a++ a+ + +g
  Pahal.F01731.1 147 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTYATQEEAAVAYDIAAIEHRG 198
                     89****99**********988422...5**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-1545113IPR016177DNA-binding domain
SMARTSM003803.3E-2346118IPR001471AP2/ERF domain
PROSITE profilePS5103219.50646112IPR001471AP2/ERF domain
PfamPF008472.0E-1146104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-1446113IPR001471AP2/ERF domain
PRINTSPR003675.8E-54758IPR001471AP2/ERF domain
CDDcd000184.87E-21147207No hitNo description
PfamPF008471.0E-9147197IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-17147207IPR016177DNA-binding domain
SMARTSM003804.1E-26148212IPR001471AP2/ERF domain
PROSITE profilePS5103217.741148206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-17148206IPR001471AP2/ERF domain
PRINTSPR003675.8E-5188208IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAKPRRSAAA TDGDPSAAAG LRGEPAPKRA RRKSGPRESP SQRSSAYRGV TRHRWTGRFE  60
AHLWDKDARG GSRGKKGKQV YLGAYDDEDA AARAHDLAAL KYWGPGTVLN FPLHGYDEEL  120
REMDGQPREE YIGSLRRRSS GFSRGVSKYR GVARHHHNGR WEARIGRVLG NKYLYLGTYA  180
TQEEAAVAYD IAAIEHRGLN AVTNFDIGHY VSHWQRHRHG AVDGGLGATD AAPLIPFQLP  240
LPDDDSPERP AAVGLDETTG AADFHDGDGH PQRQTAACPF LGDGAQPADQ AGPPARHAAP  300
TPSALDLLLQ SSKFKEMMEQ VSAAAASASS SSSSSPSPQP PLSPQRQPEI IGGTPAPCGF  360
PDDVQTFFDL ENEDAMGFTF AEVDTFLFGD LGEYAAPMFQ YCDLDVWSAL DG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0698470.0BT069847.1 Zea mays full-length cDNA clone ZM_BFb0304K10 mRNA, complete cds.
GenBankKJ7282110.0KJ728211.1 Zea mays clone pUT6488 AP2-EREBP transcription factor (EREB60) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820075.10.0AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2S3I2X80.0A0A2S3I2X8_9POAL; Uncharacterized protein
STRINGSi013842m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.24e-72AP2 family protein