PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F01627.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 345aa MW: 35966.5 Da PI: 5.3219

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F01627.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.7	5.8e-14	277	328	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++ N +L+k+ ee+ ++ Pahal.F01627.3 277 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKELNAELQKKQEEIMEMQ 328 79*******************************************9999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	273	337	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.944	275	326	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.63E-26	277	331	No hit	No description
SuperFamily	SSF57959	5.5E-10	277	325	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-14	277	326	No hit	No description
Pfam	PF00170	2.9E-12	277	329	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	280	295	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDLKDGERRG AAGPGPLSRQ GSIYSLTFDE FQSTLGGMGG GLGKDFGSMN MDELLRSIWT 60 AEESQAMALA SASASAAGAA GEDGAALQRQ GSLTLPRTLS VKTVDEVWRD FVREGPPPGT 120 AGGAEPQPSR QPTLGEMTLE EFLVRAGVVR DNPAAAAMAA AVPAQPVAPR PIQAVSNGAS 180 IFFGNFGAAN DAGAGAMGFA PVRIEDQGMG NGLMPGVAGM PSAAVTVSPV DTSVAQLDSV 240 GKGNGDLSSP MAPVPYPFEG VIRGRRSGAG VEKVVERRQR RMIKNRESAA RSRARKQAYT 300 MELEAEVQKL KELNAELQKK QEEIMEMQKN QRPFGRASEG SGSS*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDLKDGERRG AAGPGPLSRQ GSIYSLTFDE FQSTLGGMGG GLGKDFGSMN MDELLRSIWT  60
AEESQAMALA SASASAAGAA GEDGAALQRQ GSLTLPRTLS VKTVDEVWRD FVREGPPPGT  120
AGGAEPQPSR QPTLGEMTLE EFLVRAGVVR DNPAAAAMAA AVPAQPVAPR PIQAVSNGAS  180
IFFGNFGAAN DAGAGAMGFA PVRIEDQGMG NGLMPGVAGM PSAAVTVSPV DTSVAQLDSV  240
GKGNGDLSSP MAPVPYPFEG VIRGRRSGAG VEKVVERRQR RMIKNRESAA RSRARKQAYT  300
MELEAEVQKL KELNAELQKK QEEIMEMQKN QRPFGRASEG SGSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269\|PubMed:10611387}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA). {ECO:0000269\|PubMed:10611387}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039652	0.0	BT039652.1 Zea mays full-length cDNA clone ZM_BFc0037E11 mRNA, complete cds.
GenBank	EU964768	0.0	EU964768.1 Zea mays clone 281458 bZIP transcription factor ABI5 mRNA, complete cds.
GenBank	KJ726943	0.0	KJ726943.1 Zea mays clone pUT3489 bZIP transcription factor (bZIP68) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821119.1	0.0	bZIP transcription factor TRAB1-like isoform X3
Swissprot	Q6ZDF3	1e-134	TRAB1_ORYSJ; bZIP transcription factor TRAB1
TrEMBL	A0A2S3I369	0.0	A0A2S3I369_9POAL; Uncharacterized protein
STRING	Si013904m	1e-176	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-37	abscisic acid responsive elements-binding factor 2

Link Out ? help Back to Top
Phytozome	Pahal.F01627.3

Publications ? help Back to Top
Kagaya Y,Hobo T,Murata M,Ban A,Hattori T Abscisic acid-induced transcription is mediated by phosphorylation of an abscisic acid response element binding factor, TRAB1. Plant Cell, 2002. 14(12): p. 3177-89 [PMID:12468735] Kobayashi Y, et al. Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors. Plant J., 2005. 44(6): p. 939-49 [PMID:16359387] Kobayashi F,Maeta E,Terashima A,Takumi S Positive role of a wheat HvABI5 ortholog in abiotic stress response of seedlings. Physiol Plant, 2008. 134(1): p. 74-86 [PMID:18433415]