PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01484.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 479aa    MW: 53187.2 Da    PI: 6.9029
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01484.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15131221199
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v +  +l lp  f+++h  k  e++ ++led++g+  +  +   + +++  l++GW++F+  +++k+gD+v+F+l+++++f  +v 
  Pahal.F01484.1 131 FVKRMLQSHVVRGFWLGLPTYFCNKHLPK--EDTGIVLEDQNGQDHQTLY--LGVKQG--LSAGWRGFAIKHDIKVGDVVIFQLVRSTKF--KVY 217
                     89**********************99533..4457************999..666666..9***********************997777..999 PP

                     EE-S CS
              B3  96 vfrk 99 
                     ++r+
  Pahal.F01484.1 218 IIRA 221
                     8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-19124222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-22125222IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-23129220No hitNo description
SMARTSM010192.4E-15131222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899131222IPR003340B3 DNA binding domain
PfamPF023626.0E-14131221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MAMDPPLKRK RGRPSGSQSA KSKMEQKMAL VKQRLALLDS ASSSSAEIDK DDDFVPMDDE  60
LTIVAAHQPI EIDYGDTYNE DEVVPLKVLA SKGLESEKRR LPGQNISASY GSVMDRAVEV  120
QAKLPPEHPS FVKRMLQSHV VRGFWLGLPT YFCNKHLPKE DTGIVLEDQN GQDHQTLYLG  180
VKQGLSAGWR GFAIKHDIKV GDVVIFQLVR STKFKVYIIR ANEFTTADGA ISLLNLEVHK  240
KGKLSKKGCF DDAKSREAEK ASPVDDKVPA PQSDDNNAVV SEAIDGLRIS ADSDMDFGDV  300
TSFSNFNIVV DSLVIDCKFH DHLRRTYYEL CCSQKSFLHK NLLKQLNLAL VVGVIMETIS  360
IAEGIRACKA QAPSREDLVI WKKTLESLEL LGMNVAFLLK RINDLLGLPA GARDLSECQK  420
YKELKSERAH AGEKVKVLEL MLLNVKGVLQ KMDAEMEEME SSVKRSGLML QQLATAPW*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF2828021e-46JF282802.1 Panicum virgatum clone B01_PVCAG-2 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818273.10.0B3 domain-containing protein Os01g0234100-like isoform X1
SwissprotQ0JP990.0Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A2S3HZ840.0A0A2S3HZ84_9POAL; Uncharacterized protein
STRINGPavir.Eb00031.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-36B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]