PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F01474.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 621aa    MW: 67465.2 Da    PI: 7.2888
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F01474.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12466512455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Pahal.F01474.1 466 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 512
                     799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.3E-5060245IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831462511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-15465516No hitNo description
SuperFamilySSF474599.81E-19465529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-18466525IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-10466512IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-16468517IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVMKMEMEDD GAVGGTGGTW TEEDRALGAA VLGTDAFAYL TKGGGAISEG LVAASLPDDL  60
QNKLQELVES EGPGTGWNYA IFWQLSRTKS GDLVLGWGDG SCREPRDGEV GAAASAGSDD  120
TKQLMRKRVL QRLHIAFGVA DEEDYAPGID QVTDTEVFFL ASMYFAFPRR AGGPGQVFAA  180
GIPLWIPNNE RKVFPANYCY RGFLANAAGF RTIVLVPFES GVLELGSMQH IAESSDTIQN  240
IRSVFTGARG NKAAVQRHEG NGPTPPERSP GLAKIFGKDL NLGRPSAVPA VGVSKVDERS  300
WEQRGAAGGG TSLLPNVQKG LQNFTWSQAR GLNSHQQKFG NGVLIVSNEA AHRNNGAADS  360
PSATQFQLQK APQLQKLQLQ KLPHIQKTPQ LVNQQPLQPQ VPRQIDFSAG SSSKSGVLVT  420
RAAVLDGESA EVDGLCKEEG PPPVIEDRRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ  480
RFYALRAVVP NISKMDKASL LGDAITYITD LQKKLKDMET ERERLLESGM VDPRERAPRP  540
EVDIQVVQDE VLVRVMSPME SHPVKKVFQA FEEAEVRVGE SKVTGNNNGT VVHSFIIKCP  600
GTEQQTREKV IAAMSRAMSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-28460522264Transcription factor MYC2
5gnj_B7e-28460522264Transcription factor MYC2
5gnj_E7e-28460522264Transcription factor MYC2
5gnj_F7e-28460522264Transcription factor MYC2
5gnj_G7e-28460522264Transcription factor MYC2
5gnj_I7e-28460522264Transcription factor MYC2
5gnj_M7e-28460522264Transcription factor MYC2
5gnj_N7e-28460522264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1447455RRPRKRGRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549530.0BT054953.1 Zea mays full-length cDNA clone ZM_BFc0103E04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816895.10.0transcription factor bHLH13-like
TrEMBLA0A2S3HZ940.0A0A2S3HZ94_9POAL; Uncharacterized protein
STRINGPavir.Ea00030.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51743860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.39e-71bHLH family protein