PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00906.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 245aa MW: 26021.8 Da PI: 10.9808 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.1 | 5.9e-20 | 84 | 134 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +++GVr+++ +grW+AeIrdp + r+r +lg+f taeeAa+a++ a +l+g+ Pahal.F00906.1 84 HFRGVRRRP-WGRWAAEIRDPHN---RRRLWLGTFNTAEEAAAAYDTASIRLRGA 134 69*******.**********732...4*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.7E-34 | 84 | 147 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 84 | 141 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.31E-30 | 84 | 141 | No hit | No description |
PROSITE profile | PS51032 | 24.026 | 84 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-30 | 84 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 84 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 85 | 96 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-10 | 107 | 123 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGPNPSLQQL AAAAAEVAMT VSEPPLQPRA RVVRILVHDA DATDSSSSDD EAPPPPPRRA 60 RGGSSSVGAK RRVMEAVGAN PPVHFRGVRR RPWGRWAAEI RDPHNRRRLW LGTFNTAEEA 120 AAAYDTASIR LRGASARTNF PSARYPPPSE PAKPIISLTP EPGKVITLPP VPVKPTVPLQ 180 VKKEGGSYNG QVEGGSSELK AFAPKPMWEM IPGKRKKRPG CGNGSCLRIA IRAASVCVEE 240 VGGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 84 | 141 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 84 | 141 | 5 | 63 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794389.1 | 1e-175 | ethylene-responsive transcription factor CRF3-like | ||||
TrEMBL | A0A2S3IGU2 | 1e-173 | A0A2S3IGU2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia00165.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11573 | 28 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03800.1 | 2e-22 | ERF domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00906.1 |