PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00780.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 327aa    MW: 35169.6 Da    PI: 8.7368
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00780.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131863146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+eEde l++ v+++G++ W++I ++  + Rt+k+c++rw +
   Pahal.F00780.1 18 KGPWTAEEDEVLLRHVREHGPREWSSIRSKGLLPRTGKSCRLRWVN 63
                     79*************************8876677**********87 PP
2Myb_DNA-binding44.63.3e-1474114345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +d+ +qlG++ W++Ia +++ gRt++++k++w 
   Pahal.F00780.1  74 KFSAEEERVVIDLQAQLGNK-WARIATYLP-GRTDNDVKNFWS 114
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-211366IPR009057Homeodomain-like
PROSITE profilePS5129421.9031369IPR017930Myb domain
SuperFamilySSF466894.49E-2816113IPR009057Homeodomain-like
SMARTSM007173.5E-121767IPR001005SANT/Myb domain
CDDcd001676.23E-132065No hitNo description
PfamPF139214.3E-122171No hitNo description
Gene3DG3DSA:1.10.10.604.9E-1867119IPR009057Homeodomain-like
PROSITE profilePS5129417.94870121IPR017930Myb domain
SMARTSM007171.2E-1171119IPR001005SANT/Myb domain
CDDcd001672.75E-1074113No hitNo description
PfamPF002496.2E-1274114IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKPRGGRGGG GEQPAVRKGP WTAEEDEVLL RHVREHGPRE WSSIRSKGLL PRTGKSCRLR  60
WVNKLRPDLK TGCKFSAEEE RVVIDLQAQL GNKWARIATY LPGRTDNDVK NFWSTRQKRL  120
ARLLRAAVPR RRPGKQSGSV SSSHAYELPT QKDPCLDMIP FQGTTTPAHH TGESSSHEPR  180
AANQHRAANA PSLGAHSLPP PPVPLLTHGG AGAGHGSSSA APTSTALLPF DGDYYARDAV  240
AGVDPLVFVD PAACPEPLAV VPPGTFFGLD DDYVHAGRVL HPDESGVRFD DLPPETFDFF  300
ELPHLPPSPS PTVGSLSGAD KGQKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411923126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410GGRGGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630007e-44AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316137e-44AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149607e-44AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-44CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552187e-44CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822469.10.0probable transcription factor MYB58
TrEMBLA0A2S3I3X00.0A0A2S3I3X0_9POAL; Uncharacterized protein
STRINGPavir.Fa00479.1.p1e-175(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.15e-60MYB family protein