PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.F00770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 26423.1 Da PI: 9.5656 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.1 | 2.8e-10 | 49 | 94 | 5 | 54 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 GVr + +g ++AeIr ps+ r r+++g+f+ a +Aa a++aa+ ++ Pahal.F00770.1 49 GVR-ERLWGGFAAEIRIPSS---RSRVWIGRFDHALQAALAYDAAMFLFY 94 998.777**********965...4*********************97655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-15 | 46 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.502 | 46 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-11 | 47 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-18 | 48 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-4 | 48 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.64E-16 | 48 | 109 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MASSAPTSGS SGAARKGSRR GGSRRPAIAR PAPARRAGGG LHRDLGWVGV RERLWGGFAA 60 EIRIPSSRSR VWIGRFDHAL QAALAYDAAM FLFYGQKLPK LRRYNFPETP RPNVPEVVRK 120 GLTVANVKAI AEKHGRSFGR FLPLPPPVIP AAPPAAAPPQ MAEAGGAAAA AAAAAGAGVA 180 HAAPLQLAEA AGAGGVAVDA TPAGAGATTA AADRHGADEV YIDAEILTAA DCQLPCNPDD 240 DFIGLLDLDM DLIFSEI* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822467.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A2S3I3V5 | 1e-179 | A0A2S3I3V5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Fb02057.1.p | 4e-73 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5444 | 25 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31060.1 | 9e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.F00770.1 |