PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00674.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 401aa    MW: 42074.7 Da    PI: 5.3165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00674.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09210257455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pahal.F00674.2 210 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 257
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-16204270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-10204261No hitNo description
PROSITE profilePS5088815.301206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-16206269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-6210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-10212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLDRF CGDPGFAERA  60
ARLSSFSGQR FAGAGAAAGL FGLPPPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK  120
APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGQK  180
PAGKGNNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI  240
GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSDLPT LLQKDMFQAC GPSASSVFSL  300
ESSSSGFPFS DQGDVFQSFV PNGLENQCGL NPLDLALSQA TNAPYAFQDG TPSTNLQRNF  360
WEDDLQSVFH IDNGQSQENG GVSAQSFHGQ LQAGHMKIEF *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0361180.0BT036118.1 Zea mays full-length cDNA clone ZM_BFb0096I10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821025.10.0transcription factor bHLH78-like isoform X2
TrEMBLA0A2S3I4270.0A0A2S3I427_9POAL; Uncharacterized protein
STRINGSi013867m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.12e-51bHLH family protein