PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00674.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 402aa MW: 42202.8 Da PI: 5.3165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00674.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.5e-09	210	257	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P + +k Ka +L + ++Y++sLq Pahal.F00674.1 210 SHSLAERVRRERISQRMKVLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 257 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-16	204	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.78E-10	204	261	No hit	No description
PROSITE profile	PS50888	15.301	206	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.7E-16	206	269	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-6	210	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.0E-10	212	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLDRF CGDPGFAERA 60 ARLSSFSGQR FAGAGAAAGL FGLPPPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK 120 APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGQK 180 PAGKGNNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI 240 GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSDLPT LLQKDMFQAC GPSASSVFSL 300 ESSSSGFPFS DQGDVFQSFV PNGLENQCGL NPLDLALSQA TNAPYAFQDG TPSTNLQQRN 360 FWEDDLQSVF HIDNGQSQEN GGVSAQSFHG QLQAGHMKIE F*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MEGRAGGGDY IASLLSSAPR LDFGVLGSVP AMLDAAAAGG DGGEDCLDRF CGDPGFAERA  60
ARLSSFSGQR FAGAGAAAGL FGLPPPAPAA SNGEFAGSRE ASSVSDPASA MKDANAKKRK  120
APAAAKGKGK ESSAQAGDQK DPDAKRCKTE GAEGKKEESP VKPKSEQAGS DSSVEDGGQK  180
PAGKGNNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE RISQRMKVLQ DLVPGCNKVI  240
GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSDLPT LLQKDMFQAC GPSASSVFSL  300
ESSSSGFPFS DQGDVFQSFV PNGLENQCGL NPLDLALSQA TNAPYAFQDG TPSTNLQQRN  360
FWEDDLQSVF HIDNGQSQEN GGVSAQSFHG QLQAGHMKIE F*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT036118	0.0	BT036118.1 Zea mays full-length cDNA clone ZM_BFb0096I10 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025821024.1	0.0	transcription factor bHLH78-like isoform X1
TrEMBL	A0A2S3I448	0.0	A0A2S3I448_9POAL; Uncharacterized protein
STRING	Si013867m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48560.1	8e-51	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.F00674.1