PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F00469.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 400aa    MW: 41632.1 Da    PI: 5.6751
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F00469.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35351262102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+k+ll++
  Pahal.F00469.1  35 FLTKTYQLVDDPAVDDVISWNDDGSAFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGEKRLLCD 120
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Pahal.F00469.1 121 IHRRKV 126
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-3827119IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5931124IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.44E-3532124IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.7E-3235124IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-203558IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407498IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-208698IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAAEQAAAGG EPPPATPQPA EGVTAAGQRS VPTPFLTKTY QLVDDPAVDD VISWNDDGSA  60
FVVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANDCF RRGEKRLLCD  120
IHRRKVTPAA AATGAAVTVA AAAAAAAAIP MALPVGSPVY SGEEQVLSSS SSPEPPPLQP  180
QAASGSGSGG AASGGDAGEE NDRLRRENAR LARELGQMKK LCNNILLLMS KYAATQQLDA  240
AKAAAAAAAG NCSGESAEAA ATPPPLPSVL ELLPSCRGGH AAAEEPPEAA AAAGTERGDD  300
DEDKAGARLF GVSIGRKRAR DDTSNGYSGG VEDPVSRGAA AEVKAEPVDA HPDQHQQQQL  360
KEPQAWPIYR PRPVYHPLRA CSGSAGSAGS DHDGSHSSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-272613012125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650330.0EU965033.1 Zea mays clone 283366 heat shock factor protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822703.10.0heat stress transcription factor B-2b-like
SwissprotQ6Z9C81e-149HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLA0A2S3I4N00.0A0A2S3I4N0_9POAL; Uncharacterized protein
STRINGPavir.Fb02392.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-58HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]