PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F00032.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 902aa MW: 99701.1 Da PI: 9.5504

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F00032.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.6	3.7e-07	210	229	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr+f + G C++G++C+F H Pahal.F00032.2 210 PCRDFVA-GRCRRGSNCRFLH 229 7****.*********** PP
2	zf-CCCH	27.6	5.2e-09	292	314	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 te C +fa+ G C +G++C+FaHg Pahal.F00032.2 292 TEQCYNFAK-GRCARGASCRFAHG 314 899****.***********9 PP
3	zf-CCCH	23.4	1e-07	353	372	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ G C++G++C++ H Pahal.F00032.2 353 PCKFFAE-GRCRRGENCPYLH 372 8****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0014	206	231	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.737	210	232	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.9E-5	210	231	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	210	229	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.497	289	316	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.002	289	315	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-6	292	315	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	292	314	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.896	348	375	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.6E-5	348	374	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.09E-7	349	373	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.0E-5	352	374	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-5	352	372	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MTGDSRRQRS KWDAKEASHD IVEISEDESL PDKTGVHRKG GDVHPKPDTS MHHCGAGHEK 60 EQADGFNKDT KELQPKAPSE RSQPLRAADE RDNNEWSKAA GNQGMNRYAD DRRRGDGWGT 120 ARSHGYSSRV PSDTDAWRPR SRSPSPRGVW NRSRRNRSRS RSRSRSRNRS RSRSRSIGRG 180 RGRSRSPYFA DRGSDWRVER GRTSGGPALP CRDFVAGRCR RGSNCRFLHE DGGHRPFEDH 240 YPADPRERFG YQNKEFMDSR EPNDYLRSRQ SRDHYDDGPW ERSEPRRDYR STEQCYNFAK 300 GRCARGASCR FAHGDSASHG GWRDDARESA HDRGGPDSSY GNRTENRRVN KNPCKFFAEG 360 RCRRGENCPY LHEEAPQSQI GVSAPDAPLN YSDGRPARGN YSNWSEQNNA MHETSQILSR 420 DDRDNPISQS IGRNDSRYEY ESRHSKDAGK SQFQIIPQED FGSQVENKHE VAVSQQPQLL 480 APVQTTADNM NNENVPGMGG QNAPATVGDL SMQSGMHSAN NLAEQSLGQI LQRHDAIPHI 540 PGPSNLPVTT QLQNVTSSFP SNSHVKQNNF PVHQNRQEQF VVPQAVANNP TPGMQGQPVA 600 PHMGHGQHVY GLEPQALPNP SAAHNGHNFS IASQVPQNLP TTVLLPTTVL AGQSQGTVDI 660 PRLGQDSGSQ STRNMQNFQS VPNTQNQSLQ GLPLVPTSSS TDMAGPTVSH NAAKSEEVSR 720 VTASLAQYFG NTAFGAGTGL QSSQPNVNSS LMANSSAVPP GVQPNQWPWA QHQTGAPSGP 780 AAAASVVNET VPPEIKKGEN KDSDAEGHED GDNKKSKDSK PLKMFKVALA DFVKEALKPT 840 WKEGQMSREV HKTIVKKVVD KVTSTVENTP PTKEKIEIYM SYSKEKLNKL VQAYVGKYAK 900 A*

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MTGDSRRQRS KWDAKEASHD IVEISEDESL PDKTGVHRKG GDVHPKPDTS MHHCGAGHEK  60
EQADGFNKDT KELQPKAPSE RSQPLRAADE RDNNEWSKAA GNQGMNRYAD DRRRGDGWGT  120
ARSHGYSSRV PSDTDAWRPR SRSPSPRGVW NRSRRNRSRS RSRSRSRNRS RSRSRSIGRG  180
RGRSRSPYFA DRGSDWRVER GRTSGGPALP CRDFVAGRCR RGSNCRFLHE DGGHRPFEDH  240
YPADPRERFG YQNKEFMDSR EPNDYLRSRQ SRDHYDDGPW ERSEPRRDYR STEQCYNFAK  300
GRCARGASCR FAHGDSASHG GWRDDARESA HDRGGPDSSY GNRTENRRVN KNPCKFFAEG  360
RCRRGENCPY LHEEAPQSQI GVSAPDAPLN YSDGRPARGN YSNWSEQNNA MHETSQILSR  420
DDRDNPISQS IGRNDSRYEY ESRHSKDAGK SQFQIIPQED FGSQVENKHE VAVSQQPQLL  480
APVQTTADNM NNENVPGMGG QNAPATVGDL SMQSGMHSAN NLAEQSLGQI LQRHDAIPHI  540
PGPSNLPVTT QLQNVTSSFP SNSHVKQNNF PVHQNRQEQF VVPQAVANNP TPGMQGQPVA  600
PHMGHGQHVY GLEPQALPNP SAAHNGHNFS IASQVPQNLP TTVLLPTTVL AGQSQGTVDI  660
PRLGQDSGSQ STRNMQNFQS VPNTQNQSLQ GLPLVPTSSS TDMAGPTVSH NAAKSEEVSR  720
VTASLAQYFG NTAFGAGTGL QSSQPNVNSS LMANSSAVPP GVQPNQWPWA QHQTGAPSGP  780
AAAASVVNET VPPEIKKGEN KDSDAEGHED GDNKKSKDSK PLKMFKVALA DFVKEALKPT  840
WKEGQMSREV HKTIVKKVVD KVTSTVENTP PTKEKIEIYM SYSKEKLNKL VQAYVGKYAK  900
A*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	174	RSRNRSRSRSR
2	166	174	RNRSRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820462.1	0.0	zinc finger CCCH domain-containing protein 55-like
Refseq	XP_025820463.1	0.0	zinc finger CCCH domain-containing protein 55-like
Swissprot	Q6YYC0	0.0	C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBL	A0A2T7D3C6	0.0	A0A2T7D3C6_9POAL; Uncharacterized protein
STRING	Pavir.Fa02279.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	1e-08	C3H family protein

Link Out ? help Back to Top
Phytozome	Pahal.F00032.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]