PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.E04262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 237aa MW: 24952 Da PI: 7.3583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 5.9e-30 | 130 | 188 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh Pahal.E04262.1 130 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 188 59********************************************************6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-31 | 118 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-27 | 122 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.076 | 125 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-33 | 130 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-23 | 131 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MAASLGLVGR EAYYAACSYP PTAGAASSSY LFPPELVADS GGAVMELPPP AAMADFCLPE 60 IMGARTPDYY CSPPAPVFAN GGAAAAENEM MNTSYVDCDG RMMMMSGSAG SGGRPPPRIG 120 FRTRSEVDVL DDGFKWRKYG KKAVKSSPNP RNYYRCSAEG CGVKKRVERD RDDPRYVVTT 180 YDGVHNHAVP SRGAQRPACS APLVAAPWSA PAAHCDPWGT QLHAAAAGAH SSESSY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-27 | 120 | 191 | 7 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 3e-27 | 120 | 191 | 7 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU058613 | 0.0 | KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818051.1 | 1e-172 | WRKY transcription factor WRKY24-like | ||||
TrEMBL | A0A2S3HYH6 | 1e-171 | A0A2S3HYH6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J08526.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26170.1 | 9e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.E04262.1 |