PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E04154.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 198aa MW: 20874.9 Da PI: 10.6977

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04154.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.4	5.4e-12	103	163	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ Pahal.E04154.2 103 KEQNRLKRLLRNRVSAQQARERKKAYLTELEAKAKDLELRNAELEQRVSTLQNENNTLRQI 163 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-13	102	166	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.3E-10	103	164	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.162	104	167	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.8E-16	107	166	No hit	No description
CDD	cd14704	2.24E-15	107	157	No hit	No description
SuperFamily	SSF57959	1.0E-11	107	164	No hit	No description
PROSITE pattern	PS00036	0	109	124	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SAPNNLREGG VESDEEIRRV PEMGGASASA 60 SSGAGADERP KEDGKQGQLV AATGAQGQPP AAGKKRGRTA GDKEQNRLKR LLRNRVSAQQ 120 ARERKKAYLT ELEAKAKDLE LRNAELEQRV STLQNENNTL RQILKNTTAH ASKRSGGGAG 180 GGKGGDGGGK KHHFTKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	188	GGKGGDGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU976642	0.0	EU976642.1 Zea mays clone 986002 transcription factor HY5 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815107.1	1e-137	transcription factor HY5-like
Refseq	XP_025815108.1	1e-137	transcription factor HY5-like
Swissprot	Q9SM50	3e-44	HY5_SOLLC; Transcription factor HY5
TrEMBL	A0A2S3HYD9	1e-136	A0A2S3HYD9_9POAL; Uncharacterized protein
STRING	Pavir.Eb00436.1.p	1e-96	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	4e-36	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.E04154.2

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]