PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03954.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 19217.5 Da    PI: 6.6836
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03954.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.61.2e-261160251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    rie+   rqv fskRr+g++KKA+ELS LCdaeva+i+fs+ gklyey+s
  Pahal.E03954.1 11 RIEDRVSRQVRFSKRRAGLFKKAFELSLLCDAEVALIVFSPAGKLYEYAS 60
                    8***********************************************86 PP
2K-box22.35.4e-09951502677
           K-box  26 keienLqreqRhllGedLes....LslkeLqqLeqqLekslkkiRskKnellleqi 77 
                     +e + Lq+++R ++  +L+s     + +eL++Le+ L+++l+  RskK++ll +q 
  Pahal.E03954.1  95 DEASDLQSTLREIVTWCLQSnpdeSDANELEKLENLLKNALRDTRSKKMQLLAKQN 150
                     6667788888888888886522225789************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.9E-33261IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072262IPR002100Transcription factor, MADS-box
CDDcd002654.70E-40376No hitNo description
SuperFamilySSF554557.06E-30475IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-27424IPR002100Transcription factor, MADS-box
PfamPF003191.6E-251158IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-272439IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-273960IPR002100Transcription factor, MADS-box
PfamPF014862.6E-594149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MPRRGRVELR RIEDRVSRQV RFSKRRAGLF KKAFELSLLC DAEVALIVFS PAGKLYEYAS  60
ASIEDTYDRY QQFAGAAGDE NGDRNGNDPK ISNKDEASDL QSTLREIVTW CLQSNPDESD  120
ANELEKLENL LKNALRDTRS KKMQLLAKQN SGEGTSGQGC NVVAIKQEQG TA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-18473271Myocyte-specific enhancer factor 2A
3kov_B2e-18473271Myocyte-specific enhancer factor 2A
3kov_I2e-18473271Myocyte-specific enhancer factor 2A
3kov_J2e-18473271Myocyte-specific enhancer factor 2A
3p57_A2e-18473271Myocyte-specific enhancer factor 2A
3p57_B2e-18473271Myocyte-specific enhancer factor 2A
3p57_C2e-18473271Myocyte-specific enhancer factor 2A
3p57_D2e-18473271Myocyte-specific enhancer factor 2A
3p57_I2e-18473271Myocyte-specific enhancer factor 2A
3p57_J2e-18473271Myocyte-specific enhancer factor 2A
5f28_A2e-18473372MEF2C
5f28_B2e-18473372MEF2C
5f28_C2e-18473372MEF2C
5f28_D2e-18473372MEF2C
6byy_A3e-18474373MEF2 CHIMERA
6byy_B3e-18474373MEF2 CHIMERA
6byy_C3e-18474373MEF2 CHIMERA
6byy_D3e-18474373MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305252e-82HM130525.1 Hordeum vulgare subsp. vulgare cultivar Igri ODDSOC1 (ODDSOC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817550.11e-124MADS-box transcription factor 51-like isoform X1
RefseqXP_025817551.11e-124MADS-box transcription factor 51-like isoform X1
SwissprotQ9XJ611e-70MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLA0A2S3HXS31e-123A0A2S3HXS3_9POAL; Uncharacterized protein
STRINGSb03g044170.13e-72(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22950.11e-30AGAMOUS-like 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]