PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03653.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 213aa    MW: 22182.3 Da    PI: 9.8541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03653.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41.1e-073497655
                    HHHHHHHHHHHHHHHHHHHCTSCCC................TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkas.............kapskK.lsKaeiLekAveYIksLq 55
                    + +E++RR +++    +L +l+P+a              ++p+k   +  + L  A  YIk+L+
  Pahal.E03653.1 34 KDVEKNRRLHMKGLCLKLSSLIPPAArhasllseaaasaSNPNKDaATQLDQLDSAAAYIKQLK 97
                    689*********************666************8888888****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5752896IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1032107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-833107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-43496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGCK LERKDVEKNR RLHMKGLCLK LSSLIPPAAR  60
HASLLSEAAA SASNPNKDAA TQLDQLDSAA AYIKQLKERI ESLKRRKEGG GKVGAAAAGS  120
GAAAAVRMPV VEVRCQDGAT LDVVLISAAG RPFKLHEVIT ALEEEGAEVV SASFSVVGDK  180
IFYTIHSQAL SPRIGLDATR VSERLHDLML LV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388183e-73BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268683e-73KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819704.11e-151transcription factor bHLH168-like
TrEMBLA0A2S3HXR11e-150A0A2S3HXR1_9POAL; Uncharacterized protein
TrEMBLA0A2T7DQ291e-150A0A2T7DQ29_9POAL; Uncharacterized protein
STRINGSi002847m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.12e-17bHLH family protein