PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03650.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 222aa MW: 23578.6 Da PI: 9.1758 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 40 | 87 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+Pk +s+ ++ L +A YIk+L Pahal.E03650.3 40 KEIERKRRQQMKSLCVKLASLIPKeE---YSRDaMTQLGSLDEAAAYIKKL 87 79**********************55...88888***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.588 | 34 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-12 | 39 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.09E-4 | 39 | 91 | No hit | No description |
SMART | SM00353 | 2.7E-6 | 40 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-7 | 40 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.59E-11 | 40 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MEMGAKKKSR SSDTATAGKR SSTSNNSSGG GATTPAVERK EIERKRRQQM KSLCVKLASL 60 IPKEEYSRDA MTQLGSLDEA AAYIKKLKER VDELQQKRSS AQLMAAATSG GVGGSAASTS 120 AASGSARSEG AAAEEAAEAP LVEVVHHQDD SSLDVVLISS VERPFKLHEV VTVLEEEGAE 180 IINANLSVTG RKIFHTIHCR AFSPRIGIEV SRVSERLRAL V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 42 | 47 | ERKRRQ |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818432.1 | 1e-156 | transcription factor bHLH162-like | ||||
TrEMBL | A0A2S3HX22 | 1e-155 | A0A2S3HX22_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-93 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10586.1 | 2e-11 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03650.3 |