PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03649.8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 21212.6 Da PI: 6.804 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.3 | 1.6e-09 | 36 | 84 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+P+ + ++ ++ + L +A YIk+L Pahal.E03649.8 36 KEIERKRRQHMKSLCVKLASLIPEEYYSSKDTMTQQDSLDEAATYIKKL 84 79**********************554555559**************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.702 | 30 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.18E-7 | 35 | 88 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.2E-12 | 35 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-10 | 36 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-6 | 36 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.6E-7 | 36 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDVNRSSSSS TAAEGRRSSA SNSSGGGASA AGLERKEIER KRRQHMKSLC VKLASLIPEE 60 YYSSKDTMTQ QDSLDEAATY IKKLKERVDE LQQKRSSAQL LAGMRGGGGG ASTSATTTTS 120 SGVGSEEADE EAMAAPPVVE VRHHHDGSSL DVVLVSSVAR PFKLHEVVTV LEEEGAEIIN 180 ANFSVVGRKI FYTIHSRL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 43 | ERKRRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727751 | 5e-59 | KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818152.1 | 1e-141 | transcription factor bHLH162-like isoform X4 | ||||
TrEMBL | A0A2S3HX77 | 1e-139 | A0A2S3HX77_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-109 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 2e-10 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03649.8 |