PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.E03649.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 221aa MW: 23855.8 Da PI: 7.2958 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 1.9e-09 | 36 | 84 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+P+ + ++ ++ + L +A YIk+L Pahal.E03649.12 36 KEIERKRRQHMKSLCVKLASLIPEEYYSSKDTMTQQDSLDEAATYIKKL 84 79**********************554555559**************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.702 | 30 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.60E-7 | 35 | 88 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-12 | 35 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-6 | 36 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-10 | 36 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-7 | 36 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 221 aa Download sequence Send to blast |
MDVNRSSSSS TAAEGRRSSA SNSSGGGASA AGLERKEIER KRRQHMKSLC VKLASLIPEE 60 YYSSKDTMTQ QDSLDEAATY IKKLKERVDE LQQKRSSAQL LAGMRGGGGG ASTSATTTTS 120 SGVGSEEADE EAMAAPPVVE VRHHHDGSSL DVVLVSSVAR PFKLHEVVTV LEEEGAEIIN 180 ANFSVVGRKI FYTIHSRVYR PFSIHFPLNL LHITYVSIML * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 38 | 43 | ERKRRQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ727751 | 6e-59 | KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818149.1 | 1e-140 | transcription factor bHLH162-like isoform X1 | ||||
Refseq | XP_025818150.1 | 1e-140 | transcription factor bHLH162-like isoform X2 | ||||
TrEMBL | A0A2S3HX08 | 1e-159 | A0A2S3HX08_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00786.1.p | 1e-109 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20970.1 | 4e-10 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.E03649.12 |