PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03618.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 39364.4 Da PI: 7.6486 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.7 | 6.9e-51 | 29 | 165 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+k++++ ++++ vi+evdiyk++PwdLp+k+ +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++ + Pahal.E03618.1 29 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKPITLS 122 79***************************9.89***************77777999**************************************8 PP NAM 96 ..........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +g+kk Lvfykgr pkg kt+W+mheyrl Pahal.E03618.1 123 gaaaapdsseSRAMIGVKKALVFYKGRPPKGIKTSWIMHEYRL 165 66666655544444***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-62 | 25 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.405 | 29 | 198 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 30 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MTIDLGLAPA PASSSSGGRG GMPSPCTALP PGFRFHPTDE ELILHYLRKR AAAAPCPAPV 60 IAEVDIYKFD PWDLPAKAIF GEAEWYFFSP RDRKYPNGVR PNRAAGSGYW KATGTDKPIT 120 LSGAAAAPDS SESRAMIGVK KALVFYKGRP PKGIKTSWIM HEYRLAEALA AANTYRPMRF 180 KNSSMRLDDW VLCRIYKKTT PQLYSSPPHD EPSMDGGLDL IGRQQDGSVS ADDIVATYAP 240 ASALPRPASV SDYLVDYNYS PVSELLESMP APETAAQLSI MDAGRLFYAA SHSEAAASSS 300 TAQQQQQSSH KRRFMEDYSN GDLNMLHASS GKRLMSDQAS MAANHAFSSV FEPGQTSLPD 360 RI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-71 | 23 | 200 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-71 | 23 | 200 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-71 | 23 | 200 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-71 | 23 | 200 | 11 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-71 | 23 | 200 | 14 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-71 | 23 | 200 | 11 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-71 | 23 | 200 | 11 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955420 | 0.0 | EU955420.1 Zea mays clone 1531701 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816084.1 | 0.0 | NAC transcription factor 29-like | ||||
Swissprot | Q84TD6 | 1e-83 | NAC47_ARATH; NAC transcription factor 47 | ||||
Swissprot | Q8H4S4 | 2e-83 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A2S3HX03 | 0.0 | A0A2S3HX03_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea00837.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-80 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03618.1 |
Publications ? help Back to Top | |||
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