PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03279.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 29617.8 Da    PI: 8.991
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03279.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-274291251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n +nrqvtfskRrng++KKA EL +LCda+v +i+fs tg+lye+ s
  Pahal.E03279.1 42 RIDNRTNRQVTFSKRRNGLMKKARELAILCDADVGLIVFSCTGRLYEFTS 91
                    9***********************************************75 PP
2K-box80.73.4e-271162031198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++a+ +q e+a L+++++nLq+++R+l+Ge+L+ L +++Lq L++q+e sl++iR+kK++ll+e+i +l kk   lq+en +L+k++
  Pahal.E03279.1 116 ISEAKFWQMEVATLRQQVQNLQNNNRKLMGEELSGLAIRDLQFLQSQIEMSLQSIRKKKEQLLTEEIMQLNKKGIVLQKENVELKKEV 203
                     56889********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.5533393IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-393392IPR002100Transcription factor, MADS-box
CDDcd002651.23E-4134107No hitNo description
SuperFamilySSF554551.96E-3234110IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-283555IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
PfamPF003193.7E-264289IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-285570IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-287091IPR002100Transcription factor, MADS-box
PfamPF014861.1E-24117203IPR002487Transcription factor, K-box
PROSITE profilePS5129714.025119209IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MASFGPLGRY CSGHPLFADL VGREKERERE VNMGRGKIAI QRIDNRTNRQ VTFSKRRNGL  60
MKKARELAIL CDADVGLIVF SCTGRLYEFT SSSMKSIIER YQEAREDNNC RLLNPISEAK  120
FWQMEVATLR QQVQNLQNNN RKLMGEELSG LAIRDLQFLQ SQIEMSLQSI RKKKEQLLTE  180
EIMQLNKKGI VLQKENVELK KEVSSAHQHK LELQKKLSGE STSGDCDRAS GSGSDKVPGR  240
SIAHDASEHI SLALSIEGHA DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-2133119187MEF2C
5f28_B2e-2133119187MEF2C
5f28_C2e-2133119187MEF2C
5f28_D2e-2133119187MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817983.11e-167MADS-box transcription factor 25-like
SwissprotQ84NC51e-100MAD25_ORYSJ; MADS-box transcription factor 25
TrEMBLA0A2S3HW570.0A0A2S3HW57_9POAL; Uncharacterized protein
STRINGPavir.J07457.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-69AGAMOUS-like 21
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]