PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03179.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 307aa    MW: 33153.8 Da    PI: 6.0936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03179.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.7e-163683148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd ll+ +v+ +G g+W+  a   g++Rt+k+c++rw++yl
   Pahal.E03179.1 36 RGPWTAEEDALLAGYVAAHGEGRWNELALAAGLRRTGKSCRLRWLNYL 83
                     89********************************************97 PP
2Myb_DNA-binding48.71.7e-1589132146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
   Pahal.E03179.1  89 RGGFTPREQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEVKNYWRT 132
                      788*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.6323187IPR017930Myb domain
SuperFamilySSF466894.87E-3034130IPR009057Homeodomain-like
SMARTSM007173.8E-133585IPR001005SANT/Myb domain
PfamPF002492.4E-153683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-213790IPR009057Homeodomain-like
CDDcd001672.27E-103883No hitNo description
PROSITE profilePS5129416.5888138IPR017930Myb domain
SMARTSM007171.7E-1388136IPR001005SANT/Myb domain
PfamPF002493.5E-1489132IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2291137IPR009057Homeodomain-like
CDDcd001674.74E-1192132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEMDALWMSP CGGISLPSSA AGVGEDEAAA AAELRRGPWT AEEDALLAGY VAAHGEGRWN  60
ELALAAGLRR TGKSCRLRWL NYLRPGVRRG GFTPREQLLI LDLHSRWGNR WSKIAAQLPG  120
RTDNEVKNYW RTRVQKHAKQ LGCDVGSGRF HDAMRNLWMP RLLERIHADE SAAGASHYYS  180
AASPAHAPSS KPAYQNAAAP IISNCARATS PEAASCVTGS PSSWEASPAA QFQTSSPTMA  240
ACWSTGQCQN GYSSASSGDM FEESWSELLA RANHDDADSA GLPDFGLGET GDNWWSLDDI  300
LQQPLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-243313624126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9733871e-172EU973387.1 Zea mays clone 397963 cpm7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817284.10.0transcription factor JAMYB-like
SwissprotQ2QZJ82e-79JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A2S3HVZ60.0A0A2S3HVZ6_9POAL; Uncharacterized protein
STRINGPavir.Ea00964.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.17e-71myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]