PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E03158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 707aa MW: 75484.3 Da PI: 6.647 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.4e-12 | 528 | 573 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Pahal.E03158.1 528 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 573 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 5.3E-54 | 60 | 240 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.39 | 524 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.52E-14 | 527 | 577 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-18 | 527 | 595 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-18 | 528 | 595 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-10 | 528 | 573 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-16 | 530 | 579 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MNLWTDDNAS MMEAFMASAD LPAFPWGAPA AGGGASSAAA TPPPPQAPPV MAPGFNQDTL 60 QQRLQAMIEG SRETWTYAIF WQSSVDAATG ASLLGWGDGY YKGCDDDKRK QRPLTPAAQA 120 EQEHRKRVLR ELNSLISGAA AAPDEAVEEE VTDTEWFFLV SMTQSFLNGS GLPGQALFAG 180 QHTWIASGLS AAPCERARQA YNFGLRTMVC VPVGTGVLEL GSTDVVFQTA ESMAKIRSLF 240 GGGAGGGSWP PVQPPAQQQQ QQPATGADQA ETDPSVLWLA DPVMDIKDSL SHPSAEISVT 300 KPPPPPQIHF ENGSTSTLTE NPSPSVHAPP PPPAPAAAPP QRQHQQNQAH QGPFRRELNF 360 SDFASNPSMA AAPPFFKPES GEILSFGADS NSRRNPSPAP PAATASLTTA PGSLFSQHTA 420 TLTAAAANDA KNNNNNKRSM EATSRASNTN HHPAATANEG MLSFSSAQTT RPSTGTGAPA 480 KSESDHSDLD ASVREVESSR VVAPPPEAEK RPRKRGRKPA NGREEPLNHV EAERQRREKL 540 NQRFYALRAV VPNVSKMDKA SLLGDAISYI NELRGKLTAL ESDKDTLHAQ IEALKKERDA 600 RPAPHAAGLG GHDAGPRCHA VEVDAKILGL EAMIRVQCHK RNHPSARLMT ALRELDLDVY 660 HASVSVVKDL MIQQVAVKMA SRVYSQEQLN AALYSRLAEP GTAMGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-63 | 53 | 240 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 509 | 517 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF061107 | 0.0 | AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795072.1 | 0.0 | transcription factor MYC2-like | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | A0A2S3INB8 | 0.0 | A0A2S3INB8_9POAL; Uncharacterized protein | ||||
STRING | Si039973m | 0.0 | (Setaria italica) | ||||
STRING | GRMZM2G001930_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17880.1 | 2e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E03158.1 |
Publications ? help Back to Top | |||
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