PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03087.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family G2-like
Protein Properties Length: 386aa    MW: 40546.3 Da    PI: 8.9264
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03087.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.47.6e-2499151155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++Wt+eLH+ F++a + L G+  A+Pk+il lm+v+g+t+e+v+SHLQkYRl
  Pahal.E03087.1  99 KQRVVWTEELHDMFLKAYNIL-GE-DAVPKKILALMNVDGITRENVASHLQKYRL 151
                     79*******************.55.5****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.09696154IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2497155IPR009057Homeodomain-like
SuperFamilySSF466898.96E-1898155IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-2399151IPR006447Myb domain, plants
PfamPF002491.3E-7101150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTPHASAMAP EAAGADGSRG SDMEAAARSK PRKRKKSRPP PMEAAAQSKP TKRKKKVASS  60
SAAAAGPATP SLPSGGDGTG DGQQQQLAAG DDGQQQRGKQ RVVWTEELHD MFLKAYNILG  120
EDAVPKKILA LMNVDGITRE NVASHLQKYR LSLKQEEKRV PDKGDERPNL QAEASSSQTL  180
LPTTPSPHPP PAQAQEPAPS SSLHPLPPQA PFASLNVSQL QVGHHGQQVL QTPPDCLGSN  240
STATDLLLGP GFPMAQPIQQ RLFTPPPPLE ATVATRRKLF KKQQEAGRDN AAASGYSSVL  300
VGPRARATKE EEGQGPPAEP EAAEIAAGPE EGQGRASEPG AAAAGSVSPP GSSIHGQYWK  360
IDDAEVSWDF GFLWYPTAAA ARNKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-1899155562ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13135RKRKK
23355RKKSRPPPMEAAAQSKPTKRKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819305.10.0probable transcription factor GLK2
TrEMBLA0A2S3HWF00.0A0A2S3HWF0_9POAL; Uncharacterized protein
STRINGPavir.Eb01200.1.p1e-100(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2096956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58080.13e-17response regulator 18