PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02748.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Nin-like
Protein Properties Length: 322aa    MW: 35842.9 Da    PI: 8.472
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02748.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.42.5e-27168217352
          RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ++i +++l+kyF++pi+ AA+eL+v+lTvLK++CR++GI+RWPhRk+ksl
  Pahal.E02748.1 168 DHIGFDELRKYFYMPITRAARELNVGLTVLKKRCRELGIARWPHRKMKSL 217
                     6899********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.723157238IPR003035RWP-RK domain
PfamPF020424.1E-22170217IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAPCGDGRDD DWYQYGLDDF PPLCSAPPPL ALLRSPYFSN QLPRVPVDGA TVGLDDALLL  60
PLGDIDLEAF DSADEHKMIP PAGQHTVGQD YAGVDVVHED QKPMAIADSF RPRANALELT  120
MSRHGEHQKS SSVAAALVPP PPPPLPRPRG RRSVDHRSAP AHGKTRLDHI GFDELRKYFY  180
MPITRAAREL NVGLTVLKKR CRELGIARWP HRKMKSLKSL ILNVQEMGTG MNPAAVQHEL  240
AALETYCALM EENPAIELTE RTKKLRQACF KESYKRRRAA AVNVMDRIFS FDDHKYRHPL  300
RPPPPPSSAE RHGHGSSFLG Y*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815472.10.0uncharacterized protein LOC112892548
TrEMBLA0A2T8ILJ30.0A0A2T8ILJ3_9POAL; Uncharacterized protein
STRINGPavir.Eb01347.1.p1e-174(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128882330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.11e-35RWP-RK domain-containing protein