PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 23475.2 Da PI: 7.4973 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.8e-30 | 136 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh Pahal.E01894.1 136 GDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPSYVVTMYEGVHNHV 193 5********************************************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.1E-31 | 122 | 194 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.1E-27 | 128 | 194 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.136 | 130 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-33 | 135 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-24 | 137 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MHMALASCDS LPAADAACFF PAMAYHHPCD GGGLAASAFY GGASGPAAAL FTGLAPPRRQ 60 PDAAFECLSK EDVSSVVPGT FGTPPPRMPV EQAVPDASGY AHLARGTAAV AGAEGSSTRT 120 TDRIAFRVRS EEEVIGDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCNVKK RVERDRDDPS 180 YVVTMYEGVH NHVSPGTIYY ATQDAASGRF FVAGMHQALD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-22 | 123 | 195 | 2 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058612 | 1e-105 | KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817958.1 | 1e-163 | probable WRKY transcription factor 57 | ||||
TrEMBL | A0A2S3HST6 | 1e-161 | A0A2S3HST6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb02766.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 4e-38 | WRKY DNA-binding protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01894.1 |