PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01672.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 393aa    MW: 40647.5 Da    PI: 5.405
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01672.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.4e-18272306135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pahal.E01672.1 272 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 306
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-18266316IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.571266302IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.3E-15266303IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.19E-15268329No hitNo description
CDDcd002021.66E-14271318No hitNo description
PROSITE patternPS003440272297IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15272306IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEAAAGAEYG YYGGGAGPRE RKPAGCGDHF VVDDLLVLPY DDDEEGDGEA AAGDAEAPPC  60
LQAVDAAGVK EEGGLGNFSA DSSTVTALDS CSNSFSGLGD GDFPGEFCEP YDQLAELEWL  120
SNYMGEGDDA FATEDLQKLK LISGGFTPAV NVPPAPVAPA APASAASAAQ PGMFLPEAPV  180
PAKARSKRSR VAPGNWSSRL LVLPPPPASP TSPASMAISP AESGVSAQVF PAKKPSKPSK  240
KKDAPPAPQA QPSSAPGAQP GGSAASAEGR RCLHCETDKT PQWRTGPMGP KTLCNACGVR  300
YKSGRLVPEY RPAASPTFVM SKHSNSHRKV LELRRQKEVQ HQPPHVIAGG GPGGMMHMQS  360
PLLFDGPAGP PIVSGDDFLI HHHLGADYRQ LI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817761.10.0GATA transcription factor 12-like
TrEMBLA0A2S3HRS10.0A0A2S3HRS1_9POAL; Uncharacterized protein
STRINGPavir.Eb03102.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-50GATA transcription factor 12