PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01632.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | WRKY | ||||||||
Protein Properties | Length: 300aa MW: 32732.1 Da PI: 4.6594 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.9 | 2.8e-30 | 89 | 147 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ eHnh+ Pahal.E01632.1 89 SDSWTWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFEHNHP 147 69*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-31 | 85 | 149 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-26 | 87 | 149 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-37 | 88 | 148 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.053 | 89 | 149 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 90 | 147 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSSAEDGYCS SDSPRAESPE ESQAAADAES PRAGAKRERD LCDIPASPSS PLPAAKRSRR 60 SVEKRVVSVP LAECGDRPRG ASGEGPPPSD SWTWRKYGQK PIKGSPYPRG YYRCSSSKGC 120 PARKQVERSR ADPTVLLVTY TFEHNHPSPQ PKSNSCHQQG KASPRPAAPK PEPAVEQAEL 180 GPEHELKTEP EAPEQELEPE QEQEQELKVL ASLAEPETVT TATVAPVAEE DESFDFGWFD 240 QYPTWHRSAL YAPLLPPEEW ERELQGEDAL FAGLGELPEC AVVFGRRREL SLAATAPCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 4e-21 | 64 | 149 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 4e-21 | 64 | 149 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058617 | 0.0 | KU058617.1 UNVERIFIED: Panicum miliaceum WRKY12-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817654.1 | 0.0 | probable WRKY transcription factor 65 | ||||
TrEMBL | A0A2S3HRX8 | 0.0 | A0A2S3HRX8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Eb03138.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7088 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 6e-37 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01632.1 |