PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E01615.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | VOZ | ||||||||
Protein Properties | Length: 438aa MW: 49120.4 Da PI: 4.9386 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 425.4 | 8.9e-131 | 139 | 355 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 +psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaatakspwna+el Pahal.E01615.2 139 APSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATAKSPWNAPEL 233 69************************************9879***************************************************** PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da+alyrle+k++ Pahal.E01615.2 234 FDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFKSS 328 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kksak+k+++++l+++q++++rl+a Pahal.E01615.2 329 DAKKSAKSKLTCNPLSEIQQQMVRLSA 355 *************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MDIGNGGGLY VSIVFCMQHA MDIGNGGGQY ISLVLFEVNY IILLPNCVQG CFASVLMYYV 60 NQELTVEDFL YDDDYKINLS GSNPDVLNNL EGIGQLEFPQ FNFPQELPPN VYLDMSNCGQ 120 STGDVFLHMS DLLTTMTTAP SAFLRPKCAL WDCPRPAIGS ERWHDYCSMY HADLAVKEEG 180 PPGTMPVIRP RGIDLKDGPL FAALSAKIQG KHVGIPICEG AATAKSPWNA PELFDLYIFE 240 GESIREWLFF DKPRRAFDSG NRKQRSLPDY NGRGWHESRK QVMKDFGGLK RSYYMDPQPS 300 NSYEWHLYEY EINDCDAFAL YRLEFKSSDA KKSAKSKLTC NPLSEIQQQM VRLSADSPVD 360 TKRTARGRTK ANPIDVSTNI YAVPNTTVQA NVPNAYQPVS QVDQMTYLNG SVVYGPHLPY 420 GYSVERGDFY WNSNDGT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT042403 | 0.0 | BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds. | |||
GenBank | EU971047 | 0.0 | EU971047.1 Zea mays clone 356506 vascular plant one zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818470.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-122 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2S3HRM5 | 0.0 | A0A2S3HRM5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02856.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-118 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E01615.2 |
Publications ? help Back to Top | |||
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