PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.E01615.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 557aa MW: 62141.4 Da PI: 5.0887 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 424.6 | 1.6e-130 | 258 | 474 | 2 | 217 |
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaael 95 +psafl+pkcalwdc+rpa gse+++dycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip cegaatakspwna+el Pahal.E01615.1 258 APSAFLRPKCALWDCPRPAIGSERWHDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPICEGAATAKSPWNAPEL 352 69************************************9879***************************************************** PP VOZ 96 fdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklv 190 fdl ++ege+irewlffdkprraf+sgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da+alyrle+k++ Pahal.E01615.1 353 FDLYIFEGESIREWLFFDKPRRAFDSGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRLEFKSS 447 *********************************************************************************************** PP VOZ 191 dekksakgkvskdsladlqkklgrlta 217 d+kksak+k+++++l+++q++++rl+a Pahal.E01615.1 448 DAKKSAKSKLTCNPLSEIQQQMVRLSA 474 *************************97 PP |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 557 aa Download sequence Send to blast |
MGKGPSSRAA SRHHQFRARA KTRVDDLQEM FSGLQSARKD SRPADAAVLE AQLQQMLREW 60 RSELSAPSPA SSLQGNTREL SDPPSETLRL LQLATAEEED DATSKPVEQQ QQQQQPPPPP 120 PANQNQGHAL GCQDMKPEPR EEAVDIAVAQ PQPQLLGQGV LPNGAPAAAA VFHDQMYYVN 180 QELTVEDFLY DDDYKINLSG SNPDVLNNLE GIGQLEFPQF NFPQELPPNV YLDMSNCGQS 240 TGDVFLHMSD LLTTMTTAPS AFLRPKCALW DCPRPAIGSE RWHDYCSMYH ADLAVKEEGP 300 PGTMPVIRPR GIDLKDGPLF AALSAKIQGK HVGIPICEGA ATAKSPWNAP ELFDLYIFEG 360 ESIREWLFFD KPRRAFDSGN RKQRSLPDYN GRGWHESRKQ VMKDFGGLKR SYYMDPQPSN 420 SYEWHLYEYE INDCDAFALY RLEFKSSDAK KSAKSKLTCN PLSEIQQQMV RLSADSPVDT 480 KRTARGRTKA NPIDVSTNIY AVPNTTVQAN VPNAYQPVSQ VDQMTYLNGS VVYGPHLPYG 540 YSVERGDFYW NSNDGT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT042403 | 0.0 | BT042403.1 Zea mays full-length cDNA clone ZM_BFb0220N09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025818470.1 | 0.0 | transcription factor VOZ1-like | ||||
Swissprot | Q9SGQ0 | 1e-153 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A2S3HS58 | 0.0 | A0A2S3HS58_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ea02856.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-140 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.E01615.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|