PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01267.4

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 219aa MW: 23932 Da PI: 5.9022

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01267.4	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	64	112	2	50
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +el++ r+ NReA r++R++Kka + Lee+vk+L a N++L +l+ Pahal.E01267.4 64 EELRKPRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRATNQQLLRRLQ 112 789999**************************************98887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.7E-16	58	131	No hit	No description
SMART	SM00338	4.2E-11	63	130	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.921	65	112	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.63E-8	66	113	No hit	No description
Pfam	PF07716	1.5E-12	67	120	IPR004827	Basic-leucine zipper domain
CDD	cd14686	3.39E-11	70	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MDDGVDLPSH LLLLHHEISC GFDDFLKSTT ACTHTHTCNP PGPSAAMHTH TCLHTHTQVV 60 ASDEELRKPR KPLGNREAVR KYREKKKAHA AFLEEEVKKL RATNQQLLRR LQGHAALEAE 120 VVRLRGLLFD VRGKIDAEID SFPFQKHSSV DSVICTDPPL CVNPDAELAA RVASSGGPTI 180 LDFEIDESGS ISREIDIPEV VNSMDAAGSL LNSDSLVE*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817245.1	1e-160	basic leucine zipper 23-like
Refseq	XP_025817246.1	1e-160	basic leucine zipper 23-like
Swissprot	Q8GTS2	7e-52	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A2S3HR98	1e-158	A0A2S3HR98_9POAL; Uncharacterized protein
STRING	Pavir.Eb03174.1.p	1e-130	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	3e-54	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.E01267.4

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]