PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01150.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 282aa    MW: 29966.4 Da    PI: 6.8959
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01150.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.5e-2398156359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg+ WrKYGqK+++g ++pr YYrC+++  gC+++++v+r++++p + ei Y geH+++
  Pahal.E01150.1  98 DGFIWRKYGQKDINGRKHPRLYYRCAHRqqGCNATRRVQRTRDQPAAYEIAYYGEHTCR 156
                     9**************************9999*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-2586156IPR003657WRKY domain
SuperFamilySSF1182901.83E-2291156IPR003657WRKY domain
SMARTSM007742.3E-2896157IPR003657WRKY domain
PROSITE profilePS5081119.69298153IPR003657WRKY domain
PfamPF031064.4E-2498156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MTLDIPAAVV LELMTMGQQS AAHLGDLLRA ASPASPHQEL AAEILRCCGR VIDALRATSG  60
GRKRKAPEYQ AEAAPPPKRR GRGAEAVKEV VTSGTTVDGF IWRKYGQKDI NGRKHPRLYY  120
RCAHRQQGCN ATRRVQRTRD QPAAYEIAYY GEHTCRGAAA CHPQGAAPPP AVVDFGSNSW  180
GSADAGRGGS PAASMSQGQQ GGWSPSSVSA SPSSEVGLEL EGAHAHEWEW HDAATVDELI  240
GAAPRYGPDP VTEFLDGCLG WEAVLNDPLD LAGLHHVATF Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19981561069OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586300.0KU058630.1 UNVERIFIED: Panicum miliaceum WRKY21-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817680.10.0probable WRKY transcription factor 66
TrEMBLA0A2S3HQI10.0A0A2S3HQI1_9POAL; Uncharacterized protein
STRINGPavir.Ea03258.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-24WRKY DNA-binding protein 46