PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00907.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 291aa    MW: 32027 Da    PI: 7.1802
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00907.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.2e-103985347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      WT+eE +l+ +a ++   +   +W+++a++++ ++t  +++++++++
   Pahal.E00907.1 39 EWTAEENKLFEEALARVDRNapdRWEKVAAMLP-RKTVVDVVNHYNDL 85
                     7*****************99*************.***********986 PP
2Myb_DNA-binding47.54e-15144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G g+W+ I+r+  ++Rt+ q+ s+ qky
   Pahal.E00907.1 144 PWTEEEHKLFLMGLKKYGRGDWRNISRKYVTTRTPTQVASHAQKY 188
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.3613589IPR017884SANT domain
SMARTSM007174.0E-83688IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-113893IPR009057Homeodomain-like
PfamPF002491.2E-83985IPR001005SANT/Myb domain
CDDcd001675.38E-93985No hitNo description
Gene3DG3DSA:1.10.10.607.3E-53985IPR009057Homeodomain-like
PROSITE profilePS5129418.855137193IPR017930Myb domain
SuperFamilySSF466891.87E-17139193IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-17140191IPR006447Myb domain, plants
SMARTSM007176.0E-13141191IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.9E-12141187IPR009057Homeodomain-like
PfamPF002491.4E-12144188IPR001005SANT/Myb domain
CDDcd001679.69E-12144189No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MMAEAWTQVL LPPTAPCFSG QPSCFWQDRH AGFGGRWDEW TAEENKLFEE ALARVDRNAP  60
DRWEKVAAML PRKTVVDVVN HYNDLENDVG YIEAGLVPFP HYSGSPPASG FTLEDWDGGD  120
GVFRRGYCLK RARGPDQERK KGVPWTEEEH KLFLMGLKKY GRGDWRNISR KYVTTRTPTQ  180
VASHAQKYFI RLTSGGKDKR RSSIHDITTV NLPDEDRGNA SPSPSPQSAA TNPSAADQFG  240
ALVDVKPFAP PLGVAHPYGG VKLEPKGALV AGLGFDDSVL LQMQCAAGQL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-14401021173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794440.0HF679444.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB38 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815076.10.0transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H78e-76DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2S3HPX50.0A0A2S3HPX5_9POAL; Uncharacterized protein
STRINGPavir.J16113.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22743796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.16e-80Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]