PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00844.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB_related | ||||||||
Protein Properties | Length: 193aa MW: 21652.8 Da PI: 8.0418 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.7 | 3e-14 | 125 | 169 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++++ +++G g+W+ I+r +Rt+ q+ s+ qky Pahal.E00844.1 125 PWSEEEHRLFLQGLEKYGRGDWRNISRFSVRTRTPTQVASHAQKY 169 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.493 | 17 | 71 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.085 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.95E-10 | 22 | 70 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-5 | 23 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00212 | 25 | 62 | No hit | No description |
PROSITE profile | PS51294 | 18.423 | 118 | 174 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.87E-17 | 119 | 173 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 122 | 172 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.4E-17 | 122 | 173 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 4.56E-11 | 125 | 170 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-12 | 125 | 174 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-12 | 125 | 169 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MDFHHNHQQH SVRAAGPPAP AARPWSKAED KVFEGALVMW PEHAPDRWAL VAAQLPGRTP 60 REAWEHYEAL VADVDLIERG AVDVPTSWDD DDDSSSGGGG GEEGGPTRRA GPNRPRRESR 120 RPGIPWSEEE HRLFLQGLEK YGRGDWRNIS RFSVRTRTPT QVASHAQKYF NRQLNPASRD 180 SKRKSIHDIT TP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-15 | 21 | 85 | 7 | 71 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679436 | 0.0 | HF679436.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB30 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817656.1 | 1e-139 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 2e-47 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A2S3HPP5 | 1e-137 | A0A2S3HPP5_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J02275.1.p | 1e-105 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2895 | 36 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58900.1 | 3e-48 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00844.1 |
Publications ? help Back to Top | |||
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