PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00827.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 310aa MW: 32665.4 Da PI: 4.4487

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00827.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.2	7.3e-38	24	80	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 a +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ Pahal.E00827.1 24 APNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 80 568***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-37	7	79	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-32	24	79	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.854	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MLPYAPRPPS LLVDRRYKQG GEAAPNCPRC DSPNTKFCYY NNYSLSQPRY FCKGCRRYWT 60 KGGSLRNVPV GGGCRKNRRG KSSVRSAAES IASGRDAAFG HRFPGPVRPD LVLESMVGNP 120 AIPGQAIPDV PAAADGSTID LAMLYAKFLS NPAAEAGVGA VTPESGGQVD EAFDTFSASS 180 DLSPGGVLAP AQFDPCHDGF GEWSGPVSST DPTSTASTTT TTTMLCSDVS VQAALGELNF 240 AMDQSCFDSL GLPTDVGNLS SCLSTLEDTK YDSLDSFPDD ALSLHEGMIC GPDHDWSVDC 300 QGLEALYMP*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC582408	0.0	KC582408.1 Sorghum bicolor dof11 protein (dof11) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819046.1	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A2T7DDY7	0.0	A0A2T7DDY7_9POAL; Uncharacterized protein
STRING	Si002230m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2659	36	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	6e-37	Dof family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00827.1