PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00663.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 453aa    MW: 47121.5 Da    PI: 7.4853
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00663.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.5e-05102124123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cg++F ++  +  H+r+H
  Pahal.E00663.1 102 FACHVCGRRFHSPKAMDGHMRVH 124
                     78*******************99 PP
2zf-C2H211.60.00088287305119
                     EEETTTTEEESSHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                     y+C+ Cgks+s++  L  H
  Pahal.E00663.1 287 YSCKLCGKSYSSHQGLGGH 305
                     99*********99888666 PP
3zf-C2H214.40.00011347369123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k+F++   L  H+r+H
  Pahal.E00663.1 347 HECRKCHKVFPTGVALGGHMRMH 369
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.09E-8100124No hitNo description
Gene3DG3DSA:3.30.160.604.9E-4100124IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.6E-4102124IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427102129IPR007087Zinc finger, C2H2
SMARTSM003556.9E-4102124IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280104124IPR007087Zinc finger, C2H2
SuperFamilySSF576673.09E-8282309No hitNo description
PfamPF139120.001287309IPR007087Zinc finger, C2H2
SMARTSM003550.95287309IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91287314IPR007087Zinc finger, C2H2
PROSITE patternPS000280289309IPR007087Zinc finger, C2H2
SuperFamilySSF576671.01E-5345375No hitNo description
PfamPF139122.6E-9347370IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.471347374IPR007087Zinc finger, C2H2
SMARTSM003550.018347369IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280349369IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MDSDSSSASR RRPLRDLDEG GEALEEGEYV PGRDDSDTDT DDDEELCRLQ RRLEGELGRR  60
VSWLEVVMAS GRVAPSSWES DRTISDDGSP SAASSAATAR SFACHVCGRR FHSPKAMDGH  120
MRVHGNGRQV AAAAAVSGGW AATGKRGWTG GKPSVAVSLN SESTDNHSTA VVAVRPLEPI  180
PMAIAMTSPP ATPVVSTGTN LSGEESSSAS AEPMQFEPPG ATVVTGANNP SSPGAVVHQH  240
AAPPPAAEQA GPVHHPAVLP PAVQQSQLVR HPLAPPRARP AQPAREYSCK LCGKSYSSHQ  300
GLGGHAAGHK TRQKEAEAAA AAITMGQEDG GAFLAAFRRG RRAQPPHECR KCHKVFPTGV  360
ALGGHMRMHY TGPPIVHRKN KKRGLVSEAD LRLALSTATT EAPPPPPAPA AAGRVRLFGI  420
DIVGPQAQAP PPPEEKVSSG TAEGSPPAGE QE*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682476.11e-157replication initiator 1-like
TrEMBLA0A2S3HP770.0A0A2S3HP77_9POAL; Uncharacterized protein
STRINGSi004885m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.21e-11zinc-finger protein 2