PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00552.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 321aa    MW: 35223.9 Da    PI: 9.166
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00552.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.61.8e-121135327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C+++++tGtCk+G++CkF+H++
  Pahal.E00552.3 11 QPECQYYLKTGTCKFGPTCKFHHPR 35
                    799********************96 PP
2zf-CCCH32.12e-105781327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                    +++C ++++tG+Cky ++CkF+H++
  Pahal.E00552.3 57 EKECAYYLKTGQCKYANTCKFHHPE 81
                    679********************96 PP
3zf-CCCH39.87.4e-13208233227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+G+ CkF+H++
  Pahal.E00552.3 208 DQPECQYYMKTGDCKFGAVCKFHHPR 233
                     689*********************96 PP
4zf-CCCH43.17e-14253279127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++elC+f++r+G+Ck+G++CkF H++
  Pahal.E00552.3 253 PGEELCKFYSRYGICKFGANCKFDHPM 279
                     689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.694836IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6835IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-101135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-61237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-51436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.615482IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-45481IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-65481IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-75781IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-46080IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5206233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023206234IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9208233IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-5209233IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4212232IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591252280IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8252279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6253279IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-11254279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5256277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGRVQLNTLG YPLRPNEKEC  60
AYYLKTGQCK YANTCKFHHP ELFNVVPSSR GSPIYPSVHS SASTGPQSYT GTMASWAFPR  120
ASFIPSPRWQ NPSNYAPMIV PQGLVQVPSW NSYPGQLQSP GSQQTYGTSQ QGEASAGNQG  180
MLSPYRSSSF PVPQYALQRE NVFPERPDQP ECQYYMKTGD CKFGAVCKFH HPRVRSLPPP  240
DCVLSPMGLP IRPGEELCKF YSRYGICKFG ANCKFDHPMA TPMGVYAYGF SASASPASAS  300
TNVPMARRLL GSPSGSGYTS *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0369070.0BT036907.1 Zea mays full-length cDNA clone ZM_BFb0146O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817371.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2S3HNP20.0A0A2S3HNP2_9POAL; Uncharacterized protein
STRINGPavir.J05626.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-112zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]