PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00552.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 427aa    MW: 46235.2 Da    PI: 8.6676
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00552.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-107096127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C +++rtG C++G +C+F+H+p
  Pahal.E00552.1 70 PGEPDCTYYLRTGLCRFGMSCRFNHPP 96
                    5789*********************97 PP
2zf-CCCH38.12.6e-12117141327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tGtCk+G++CkF+H++
  Pahal.E00552.1 117 QPECQYYLKTGTCKFGPTCKFHHPR 141
                     799********************96 PP
3zf-CCCH31.62.8e-10163187327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C ++++tG+Cky ++CkF+H++
  Pahal.E00552.1 163 EKECAYYLKTGQCKYANTCKFHHPE 187
                     679********************96 PP
4zf-CCCH39.31.1e-12314339227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+G+ CkF+H++
  Pahal.E00552.1 314 DQPECQYYMKTGDCKFGAVCKFHHPR 339
                     689*********************96 PP
5zf-CCCH42.61e-13359385127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++elC+f++r+G+Ck+G++CkF H++
  Pahal.E00552.1 359 PGEELCKFYSRYGICKFGANCKFDHPM 385
                     689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-56996IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.9716997IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-87196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-57497IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-47595IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6114141IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694114142IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-10117141IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6118143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-5120142IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4160187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.61160188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5160187IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-7163187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4166186IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-5312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023312340IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5315339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4318338IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-8358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591358386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6359385IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-11360385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5362383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MDDAGRASAP AAVTVSATAA PAHPPPSATA ASAADTSSPD PSVLYGEGMW EQMAMNSGAT  60
MQPGPYPERP GEPDCTYYLR TGLCRFGMSC RFNHPPDRNL AIASARMKGE YPERVGQPEC  120
QYYLKTGTCK FGPTCKFHHP REKAGIAGRV QLNTLGYPLR PNEKECAYYL KTGQCKYANT  180
CKFHHPELFN VVPSSRGSPI YPSVHSSAST GPQSYTGTMA SWAFPRASFI PSPRWQNPSN  240
YAPMIVPQGL VQVPSWNSYP GQLQSPGSQQ TYGTSQQGEA SAGNQGMLSP YRSSSFPVPQ  300
YALQRENVFP ERPDQPECQY YMKTGDCKFG AVCKFHHPRV RSLPPPDCVL SPMGLPIRPG  360
EELCKFYSRY GICKFGANCK FDHPMATPMG VYAYGFSASA SPASASTNVP MARRLLGSPS  420
GSGYTS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370350.0BT037035.1 Zea mays full-length cDNA clone ZM_BFb0152E14 mRNA, complete cds.
GenBankJX4284670.0JX428467.1 Zea mays subsp. mays clone pUT3062 C3H49 C3H type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817371.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2S3HNQ40.0A0A2S3HNQ4_9POAL; Uncharacterized protein
STRINGSi001558m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-146zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]