PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E00535.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 488aa MW: 51057 Da PI: 6.5085

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E00535.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.2	1.6e-09	292	339	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k + Ka +L + ++Y++sLq Pahal.E00535.1 292 SHSLAERVRREKISQRMKLLQDLVPGC----NKVVGKAVMLDEIINYVQSLQ 339 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-16	286	357	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.34E-10	286	343	No hit	No description
PROSITE profile	PS50888	15.256	288	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-16	290	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	292	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	294	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MNCGPPDQLP PASAPSAPSC FLNLNWDQSM AAAAAGDHLD PALSSMVSSP ASNSTAAAAT 60 DGLALHGISP QPQYGGTPLS SPPKLNLSMM GQFHHYQPPQ VGGAGPGGLP ILENLMPMGH 120 LDQFLADPGF AERAARLSGF DGRPGGSGYG GAVPGQFGLP DAGPVGALKE LELGNGRDES 180 SVSDPASASA EMALKGPSDG NAKKRKASGK GKGKDGPGST AAKDPAKEES SGKRCKSADE 240 SNGAEDNSGK GKAAQSNSEN GGKKQGKDTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR 300 REKISQRMKL LQDLVPGCNK VVGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN 360 LPNLLPKDIH QSCGPMQNSH FPLETSGAPL PYLNQSHQGS PLGCSLTNGM DNQSNMHPLD 420 PAFCRQMNSQ HPFLNGVSDA ASQVGTFWQD DLQSVVHMDI GQGQEIAATS SNSYNGSLQT 480 VHMKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MNCGPPDQLP PASAPSAPSC FLNLNWDQSM AAAAAGDHLD PALSSMVSSP ASNSTAAAAT  60
DGLALHGISP QPQYGGTPLS SPPKLNLSMM GQFHHYQPPQ VGGAGPGGLP ILENLMPMGH  120
LDQFLADPGF AERAARLSGF DGRPGGSGYG GAVPGQFGLP DAGPVGALKE LELGNGRDES  180
SVSDPASASA EMALKGPSDG NAKKRKASGK GKGKDGPGST AAKDPAKEES SGKRCKSADE  240
SNGAEDNSGK GKAAQSNSEN GGKKQGKDTS KPPEPPKDYI HVRARRGEAT DSHSLAERVR  300
REKISQRMKL LQDLVPGCNK VVGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQLDFNN  360
LPNLLPKDIH QSCGPMQNSH FPLETSGAPL PYLNQSHQGS PLGCSLTNGM DNQSNMHPLD  420
PAFCRQMNSQ HPFLNGVSDA ASQVGTFWQD DLQSVVHMDI GQGQEIAATS SNSYNGSLQT  480
VHMKMEL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818693.1	0.0	transcription factor bHLH77-like
TrEMBL	A0A2S3HNR5	0.0	A0A2S3HNR5_9POAL; Uncharacterized protein
STRING	Pavir.Ea03809.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	5e-63	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.E00535.1