PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00473.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1345aa    MW: 148802 Da    PI: 8.8373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00473.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.001113091335123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      y+Cp   C ++F+  s++ rH r+  H
  Pahal.E00473.1 1309 YVCPepGCEQTFRFVSDFSRHKRRtgH 1335
                      99********************98666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.4E-141859IPR003349JmjN domain
PROSITE profilePS5118313.5361960IPR003349JmjN domain
PfamPF023751.9E-122053IPR003349JmjN domain
SMARTSM005587.2E-47184353IPR003347JmjC domain
PROSITE profilePS5118435.298187353IPR003347JmjC domain
SuperFamilySSF511972.75E-25199351No hitNo description
PfamPF023731.9E-37217335IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.1E-412241248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551412261248IPR015880Zinc finger, C2H2-like
SMARTSM003551.112491273IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.90512491278IPR007087Zinc finger, C2H2
SuperFamilySSF576673.72E-512501286No hitNo description
Gene3DG3DSA:3.30.160.609.1E-412511277IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012511273IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.7E-912781303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.71812791308IPR007087Zinc finger, C2H2
SMARTSM003550.00112791303IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012811303IPR007087Zinc finger, C2H2
SuperFamilySSF576675.53E-1012891333No hitNo description
Gene3DG3DSA:3.30.160.602.2E-1013041331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.36713091340IPR007087Zinc finger, C2H2
SMARTSM003550.1713091335IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013111335IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0040010Biological Processpositive regulation of growth rate
GO:0045815Biological Processpositive regulation of gene expression, epigenetic
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
GO:0071558Molecular Functionhistone demethylase activity (H3-K27 specific)
Sequence ? help Back to Top
Protein Sequence    Length: 1345 aa     Download sequence    Send to blast
MPSAQGELVP PWLRSIPLAP EFRPTAAEFA DPVAYLLKIE PAAAPFGICK VVPPLPPPPK  60
RTTLGNLSRS FAALHPGDPS PTFPTRHQEL GLCPRRPRPA LKPVWHSSRR YTLPQFEAEA  120
GASRKALLAR LGVPASRQLS PLDVEALFWR STADRPVTVE YASDMPGSGF APRDARPTQL  180
PAAHVGETAW NMRGVARSPA SLLRFLREEV PGVTSPMLYV AMLFSWFAWH VEDHDLHSLN  240
YLHSGAPKTW YGVPRDAALA FEDAVRVHGY GGEVNPLETF AMLGDKTTVM SPEVLVQSGI  300
PCCRLVQNAG EFVVTFPGSY HSGFNHGFNY AEASNMATPE WLRVAKEAAV RRASINRPPM  360
VSHYQLLYEL ALSMCLRDPS SGAMEPRSSR LKEKKKSEGE QLVKKIFVQN VIEDNKLLNH  420
FLSDGSSCTI LPTSPNDGSA VSSLLSKSQS TTKPRISDCQ CSSAEAPKDS RCLPTNGLLG  480
KNGELPSSKE IPMSVCSGEK FPPTACMHDC VNMSGSSDAN NAESDKGDIN SADGLLDQGF  540
LSCVTCGILS FSCVAVVKPR ECAAKWLMSA DSSLINKQFA GSGEGHLIDA LQSATTNSGV  600
LRSGFEMDSN RISSGAAALN RNSALDLLAS AYGDPSDSDD DVLNKKIQVS NVSSELISHT  660
IESQPNNTSS IGCDGTNLSS SSKEHQQRPS SQRPQCIGNT NNGPKGVRTR NKYQLKMVLS  720
EGFQPKDIYS EMQKKVQCEP LSSNRTSTEG LHGTDCQAAH NSATICMDGN RSTTTMVDNL  780
ATSIVQPDKD SSRMHVFCLE HAIEVEKQLQ TIGGAHIFLL CRPEYPKIEV EAKLLAEEME  840
VEYDWKDIRF KEASIEDREK MREVVQDEET IPTNSDWAVK LGINLYYSAN LAKSPLYNKQ  900
LPYNRVIYKA FGCSSPNNSP VKLKTYARRQ GRAKKIALAG RWCGKIWMSN QVHPYLAHRI  960
KSHEPDEIDE ICSSIQKPNA EHVENSSREG TSTRKSSSRA IEEKTSNREK EPLEKAKSKK  1020
PKHTEEDDLK ALEGAAEASA RKSNSRTDEE NASKRKKEPV EKANTKKPKY TEEENSKSMK  1080
GASEVSPPSP SRMVIRSSSR IANRKNMLKS KMEEEDNDPA SHPKAMVEED SDDPASHSRA  1140
RGALRQKTNI DVKKQTKKTR AEKQKASSPA ALKDEERTSE CKELSFTKQQ LSSRKQKTKV  1200
EEKQQMKKTR ENKGAPPSSP KHGEEYACNI EGCSMSFGTK QELSLHKRDI CPVKGCGRKF  1260
FSHKYLLQHR KVHNDDRPLK CSWTGCDMAF KWPWARTEHM RVHTGDRPYV CPEPGCEQTF  1320
RFVSDFSRHK RRTGHAAKKA KTKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A2e-70124638430Transcription factor jumonji (Jmj) family protein
6ip4_A2e-70124638430Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110531068KRKKEPVEKANTKKPK
213291343KRRTGHAAKKAKTKK
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815151.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A2S3HNW70.0A0A2S3HNW7_9POAL; Uncharacterized protein
STRINGPavir.Ea03512.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]