PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.E00328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22548.2 Da PI: 6.4165 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.5 | 1.9e-09 | 43 | 92 | 1 | 56 |
AP2 1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + g Wv+e ++r++lg+ t+e+Aa+a++ a+ +l+g+ Pahal.E00328.1 43 PVYRGVRDRAGPGGtrWVCE---A-----QARIWLGTDPTPEMAARAHDVAAIALRGA 92 5799**7333333367**99...5.....7*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-5 | 43 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-10 | 44 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.029 | 44 | 100 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-14 | 44 | 106 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-16 | 44 | 102 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.99E-17 | 45 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDAKGDSSSA ASSSSPPTSQ GRRLPQHQLP PKRRAGRKKT RHPVYRGVRD RAGPGGTRWV 60 CEAQARIWLG TDPTPEMAAR AHDVAAIALR GASTADLNFP DSVHTLPRAR TAVPEDIRCA 120 AAQAAELHRP SSGSSSGHQQ HIIATAAEPC TPSWAFLDED AIFDMPGLMD DMARGMLLTP 180 PAMGRGIDWD AVDDEHTHVD GTLWMDMED* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727671 | 3e-76 | KJ727671.1 Zea mays clone pUT5598 AP2-EREBP transcription factor (EREB141) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819286.1 | 1e-132 | LOW QUALITY PROTEIN: dehydration-responsive element-binding protein 1F-like | ||||
Swissprot | A2WZI4 | 3e-66 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-66 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A2S3HMS6 | 1e-149 | A0A2S3HMS6_9POAL; Uncharacterized protein | ||||
STRING | Si002846m | 3e-78 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 8e-35 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.E00328.1 |
Publications ? help Back to Top | |||
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