PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E00021.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 333aa    MW: 35257.5 Da    PI: 9.0254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E00021.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026151173123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ Cgk ++++  L  H  +H
  Pahal.E00021.1 151 YTCKFCGKAYTSHQALGGHVAKH 173
                     9***************9999988 PP
2zf-C2H214.40.00011218240123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +C+k+F +   L  H+r+H
  Pahal.E00021.1 218 HQCRKCHKVFATGVALGGHMRVH 240
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.600.001148174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.63E-7149173No hitNo description
PfamPF139125.3E-4151175IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18151178IPR007087Zinc finger, C2H2
SMARTSM003550.016151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576672.63E-7213240No hitNo description
PfamPF139123.4E-7217241IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.866218245IPR007087Zinc finger, C2H2
SMARTSM003550.016218240IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSSSSLRPR RRLADDDDDL EEGQFVPTAY QQSSDTDNDD ANPTHVGHYR RRLSLEELLA  60
LGRGDALPSP TPSCESDGTN SDDRGGNPSP ASVFRAEPKR VAHQPAPPLP YADQAPQLVH  120
HQPPAAQQQQ QQPPRTVVVP RGAADRPQRE YTCKFCGKAY TSHQALGGHV AKHKSSQREA  180
KAAAAAAAAA GMMMPIQDGG AFLAALRRAR RAEAPPHHQC RKCHKVFATG VALGGHMRVH  240
YTGPPIVPAR KKNRKRGLAP LAVEDVAVAA PPPTGLSLAL PIKTEEAPSA APAGAARVVR  300
LFGIDIGQKV QAPSEQQCSG TTEEFSAAGG QP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.12e-90zinc finger protein GLI4-like
TrEMBLA0A2T8KGU51e-178A0A2T8KGU5_9POAL; Uncharacterized protein
STRINGPavir.Cb02113.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76121136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-11zinc-finger protein 2