PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02836.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GeBP
Protein Properties Length: 319aa    MW: 34044.3 Da    PI: 10.5577
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02836.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.93.8e-15117205397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                     +++lwse De++lL G   fk++tg  p   d+ +++e +++s+  +  +  +  K++rLK Kf++ v         + s++h++ + +l+  +W
  Pahal.D02836.1 117 ISKLWSEADEVALLTGAAAFKDRTGIAPRLpDMPDLFEAIRDSLAPHLDQAKMYYKLKRLKSKFQHSVPG-------DSSTAHEHRVRDLCAALW 204
                     578***********************98877**********************************99998.......678889999999999999 PP

          DUF573  97 g 97 
                     g
  Pahal.D02836.1 205 G 205
                     7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-14118205IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MPSKRPSPHA MDEAAAAGSA ARLRPSTPRS KKRSSRSKSR ARSRDRRRSP NPNPSSRRDR  60
APEPGSAAPA PSRKSDRRPK PRYIPDSATL ATAIVSSAAA AAAAASGGGG RGSAGAISKL  120
WSEADEVALL TGAAAFKDRT GIAPRLPDMP DLFEAIRDSL APHLDQAKMY YKLKRLKSKF  180
QHSVPGDSST AHEHRVRDLC AALWGAELAR PAENDVVDAE EAEEEDARGG FAGGDREGAA  240
RLPMVKEVLG EYWKSNGQGL SGVSLEKGLA LLGSQEASVA EGKWRRQLEA DMRMQMRRHD  300
LGKEVYGLLI DAIKGLGP*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811058.10.0transcription factor STKL2
TrEMBLA0A3L6PBN70.0A0A3L6PBN7_PANMI; Uncharacterized protein
STRINGSi006601m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.14e-09DNA-binding storekeeper protein-related transcriptional regulator