PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.D02632.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 287aa MW: 32922.6 Da PI: 8.0857

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.D02632.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	87.7	9.8e-28	155	205	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Pahal.D02632.1 155 ETALTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 205 6789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.042	143	225	IPR003035	RWP-RK domain
Pfam	PF02042	6.5E-22	158	205	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEANHEESSL LPYWTSAWTD SNLLEEDALL SSLSFPSLHF QPSYSAITPS NILQGILLVF 60 PFHSGIQIHT QGVIVFRIRS AQRLVRLDWD ADELDAIFKD DVLKHWDEME RADSKTEDGR 120 KGLPLLCYRE EKEVSSGSNS DTKVVGAGQR ARPEETALTF ELVSQYFYMP IMQAARELNV 180 GLTLLKKRCR ELGIPRWPHR KMKSLQSLIN NVQVLQEAGK ATGEEQLRAV VEMLQQEKQL 240 LEQRPYVQLE EKTKRLRQAC FKANYKKRRL LAIEAGEAPP RRTHKY*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-138	protein RKD2
TrEMBL	A0A3L6RY28	1e-155	A0A3L6RY28_PANMI; Protein RKD2
STRING	Pavir.Da01160.1.p	1e-138	(Panicum virgatum)
STRING	Pavir.J13146.1.p	1e-141	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	6e-39	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.D02632.1