PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.D02467.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | AP2 | ||||||||
Protein Properties | Length: 454aa MW: 48119.6 Da PI: 7.1945 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.4 | 4.2e-14 | 172 | 231 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Pahal.D02467.1 172 SIYRGVTRHRWTGRYEAHLWDnTCRkEGqkRKgRQVYLGGYDKEDKAARAYDIAALKYWG 231 57*******************554454475337**********99*************98 PP | |||||||
2 | AP2 | 51.2 | 3.2e-16 | 274 | 326 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a++k++ge Pahal.D02467.1 274 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAALKFRGE 326 57****************988532...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.98E-20 | 172 | 239 | No hit | No description |
Pfam | PF00847 | 9.7E-11 | 172 | 231 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-16 | 172 | 240 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-16 | 173 | 240 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-25 | 173 | 245 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 173 | 239 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 174 | 185 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-18 | 274 | 334 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.7E-11 | 274 | 326 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.51E-11 | 274 | 335 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.1E-19 | 275 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-33 | 275 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 275 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 454 aa Download sequence Send to blast |
MSPPTNGAIS LAYGPATGAG ALHDPLLLPF DDGFTDEDLL GADAALLGGA AGDQTLLLLP 60 LCPGANGCGG SGSASAEGFG AQAAPTSRAV TTPVAAADAG SFSLAPQPAP APVSWGVATA 120 AAAGSFSLAP QPAPAPISWE VVTADAADGG SPAPAPPSPA LPLVHNTGSR TSIYRGVTRH 180 RWTGRYEAHL WDNTCRKEGQ KRKGRQVYLG GYDKEDKAAR AYDIAALKYW GANATTNFPR 240 ENYIREIEDM QNMRRQDVVG SLRRNSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD 300 LYLGTFATEE EAAEAYDIAA LKFRGENAVT NFEPSRYNLR EIAQRDIPIL SPGRKLDQKP 360 APEAQGQAAL SAPSFSQSQQ SSNSLRPYFL PNPQQPLPPQ PPLAQPLPIY NYSSGFGEPS 420 FYWPYGNVEQ KVQLDSKLEL VNGLLQLANS AAN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792711.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL7 | ||||
Swissprot | Q5YGP7 | 1e-105 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2S3IR72 | 0.0 | A0A2S3IR72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib00501.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13579 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57390.1 | 3e-94 | AINTEGUMENTA-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.D02467.1 |