PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02391.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 360aa    MW: 39145.1 Da    PI: 9.0182
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02391.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.85.2e-5491361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeel+ +yL++++++  +++ ++i++vdiyk++PwdLp++++ ++kewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s+
  Pahal.D02391.1   9 LPPGFRFHPTDEELILHYLRNRAANAGCPV-DIIADVDIYKFDPWDLPSRAAYGDKEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHSS 102
                     79****************************.99***************888889***************************************99 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +ge vg+kk Lvfykgr pkg+kt+W+mheyrl
  Pahal.D02391.1 103 aTGESVGVKKALVFYKGRPPKGTKTNWIMHEYRL 136
                     88999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.02E-663169IPR003441NAC domain
PROSITE profilePS5100562.4119169IPR003441NAC domain
PfamPF023658.7E-2810136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MIMANPAMLP PGFRFHPTDE ELILHYLRNR AANAGCPVDI IADVDIYKFD PWDLPSRAAY  60
GDKEWYFFSP RDRKYPNGIR PNRAAGSGYW KATGTDKPIH SSATGESVGV KKALVFYKGR  120
PPKGTKTNWI MHEYRLAADA HAAHTYRPMK FRNTSMRLDD WVLCRIYKKT SHASPMAVPP  180
LSDHEQDEPC GFDENRPYAV PSAAMLVQQV AYPALHAASS SGAQRMPRVP SLTELFNDPS  240
LAHFFEDGGV PDMARLDQHH HHQYGGATLL GHPVTSQLLA NNGNIMPGQM DSSASTSAAG  300
DGTAAGKRRR SSETSTSAGA ASAAKKPNGS CFGATFQIGN GLQGSLGHHM LLHSNMGMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-74917417170NO APICAL MERISTEM PROTEIN
1ut4_B5e-74917417170NO APICAL MERISTEM PROTEIN
1ut7_A5e-74917417170NO APICAL MERISTEM PROTEIN
1ut7_B5e-74917417170NO APICAL MERISTEM PROTEIN
3swm_A4e-74917420173NAC domain-containing protein 19
3swm_B4e-74917420173NAC domain-containing protein 19
3swm_C4e-74917420173NAC domain-containing protein 19
3swm_D4e-74917420173NAC domain-containing protein 19
3swp_A4e-74917420173NAC domain-containing protein 19
3swp_B4e-74917420173NAC domain-containing protein 19
3swp_C4e-74917420173NAC domain-containing protein 19
3swp_D4e-74917420173NAC domain-containing protein 19
4dul_A5e-74917417170NAC domain-containing protein 19
4dul_B5e-74917417170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280290.0KJ728029.1 Zea mays clone pUT6168 NAC transcription factor (NAC44) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798103.10.0NAC domain-containing protein 10-like
TrEMBLA0A2S3IQZ70.0A0A2S3IQZ7_9POAL; Uncharacterized protein
STRINGPavir.Ia03443.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.15e-83NAC-like, activated by AP3/PI