PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.D02101.4
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 368aa    MW: 41356.8 Da    PI: 7.9642
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.D02101.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.24.5e-06527326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++lC+ff+  G C  G+ C F+H+
  Pahal.D02101.4  5 RVLCKFFMH-GACLKGEYCEFSHD 27
                    78***8888.*************5 PP
2zf-CCCH28.42.8e-093555526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f+++ G C+yG+rC++ H+
  Pahal.D02101.4 35 VCTFYQK-GACSYGSRCRYDHV 55
                    5******.*************7 PP
3zf-CCCH19.32e-06150171426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C+yG+ C+ +Hg
  Pahal.D02101.4 150 PICS-FAAAGNCPYGEGCPQMHG 171
                     6788.*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.77229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-7327IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2773057IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-43256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-53254IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-73555IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-43554IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.343146173IPR000571Zinc finger, CCCH-type
SMARTSM003560.016147172IPR000571Zinc finger, CCCH-type
SuperFamilySSF578507.78E-12204279No hitNo description
Gene3DG3DSA:3.30.40.103.0E-10208274IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00146214274No hitNo description
PROSITE profilePS5008912.238215273IPR001841Zinc finger, RING-type
PfamPF000974.0E-7215272IPR018957Zinc finger, C3HC4 RING-type
SMARTSM001843.9E-7215272IPR001841Zinc finger, RING-type
PROSITE patternPS005180239248IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.676302331IPR000571Zinc finger, CCCH-type
SMARTSM003560.011302330IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSTNRVLCKF FMHGACLKGE YCEFSHDWKD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN  60
PTVLLPSPSS STARLTSTSL QLSSSGHPPR TGHPTDSSNQ RNQISVDVLA HSASKPAWRN  120
DFQHVSEDGI DWSSNQTLQN QTSLKPADLP ICSFAAAGNC PYGEGCPQMH GDLCSTCGKM  180
CLHPYRPDER EEHIKLCEKN HKRLEALKRS QEIECSVCLD RVLSKPTAAE RKFGLLSECD  240
HPFCVACIRN WRSNSPASGM DVNSALRACP ICRKLSYYVI PSVLWYFSKE EKEEIIESYK  300
SKLKSIDCKY FDFGTGSCPF GTSCFYRHAY RDGRLEEVVL RHLDADDGST VIAKNIRLSD  360
FLSRMHL*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0656290.0BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811901.10.0E3 ubiquitin-protein ligase makorin isoform X2
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2S3HJQ50.0A0A2S3HJQ5_9POAL; Uncharacterized protein
STRINGSi006712m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-138C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]