PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.D02101.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 368aa MW: 41356.8 Da PI: 7.9642 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.5e-06 | 5 | 27 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++lC+ff+ G C G+ C F+H+ Pahal.D02101.2 5 RVLCKFFMH-GACLKGEYCEFSHD 27 78***8888.*************5 PP | |||||||
2 | zf-CCCH | 28.4 | 2.8e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ Pahal.D02101.2 35 VCTFYQK-GACSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 19.3 | 2e-06 | 150 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg Pahal.D02101.2 150 PICS-FAAAGNCPYGEGCPQMHG 171 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.77 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-5 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.36E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-7 | 35 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.343 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.016 | 147 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 7.78E-12 | 204 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 3.0E-10 | 208 | 274 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00146 | 214 | 274 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 215 | 273 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 4.0E-7 | 215 | 272 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 3.9E-7 | 215 | 272 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 239 | 248 | IPR017907 | Zinc finger, RING-type, conserved site |
PROSITE profile | PS50103 | 13.676 | 302 | 331 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.011 | 302 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 368 aa Download sequence Send to blast |
MSTNRVLCKF FMHGACLKGE YCEFSHDWKD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN 60 PTVLLPSPSS STARLTSTSL QLSSSGHPPR TGHPTDSSNQ RNQISVDVLA HSASKPAWRN 120 DFQHVSEDGI DWSSNQTLQN QTSLKPADLP ICSFAAAGNC PYGEGCPQMH GDLCSTCGKM 180 CLHPYRPDER EEHIKLCEKN HKRLEALKRS QEIECSVCLD RVLSKPTAAE RKFGLLSECD 240 HPFCVACIRN WRSNSPASGM DVNSALRACP ICRKLSYYVI PSVLWYFSKE EKEEIIESYK 300 SKLKSIDCKY FDFGTGSCPF GTSCFYRHAY RDGRLEEVVL RHLDADDGST VIAKNIRLSD 360 FLSRMHL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025811901.1 | 0.0 | E3 ubiquitin-protein ligase makorin isoform X2 | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A2S3HJQ5 | 0.0 | A0A2S3HJQ5_9POAL; Uncharacterized protein | ||||
STRING | Si006712m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-138 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.D02101.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|